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Report for CCDS35913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35913.1 Public Mus musculus 10 Pcbd1 23 108 98 CCDS HistoryNCBI Gene:13180Re-query CCDS DB by CCDS ID:35913.1Re-query CCDS DB by GeneID:13180See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35913.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020298.7 ENSMUSP00000020298.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020298.7Link to Ensembl Protein Viewer:ENSMUSP00000020298.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020298Re-query CCDS DB by Protein ID:ENSMUSP00000020298
Original member Current member NCBI NM_025273.4 NP_079549.1 Accepted alive Link to Nucleotide Sequence:NM_025273.4Link to Protein Sequence:NP_079549.1Re-query CCDS DB by Nucleotide ID:NM_025273Re-query CCDS DB by Protein ID:NP_079549Link to BLAST:NP_079549.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079549.1 104 P61458 104 100% 0 0

Chromosomal Locations for CCDS 35913.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61089414 61089416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61092064 61092195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61092604 61092684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61093807 61093905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (315 nt):
ATGGCCGGCAAGGCACACAGGCTGAGCGCCGAGGAGCGAGACCAGCTGCTGCCAAACCTGAGGGCTGTGG
GGTGGAATGAAGTAGAAGGCCGAGATGCTATCTTCAAGCAGTTCCATTTTAAAGACTTCAACAGGGCTTT
TGGCTTCATGACAAGAGTAGCCCTGCAGGCTGAAAAGCTGGACCACCATCCCGAGTGGTTTAACGTGTAC
AACAAGGTCCATATCACCTTGAGCACCCATGAATGTGCCGGTCTTTCGGAACGGGATATAAACCTGGCCA
GCTTCATCGAACAAGTCGCCGTGTCTATGACATAG

Translation (104 aa):
MAGKAHRLSAEERDQLLPNLRAVGWNEVEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVY
NKVHITLSTHECAGLSERDINLASFIEQVAVSMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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