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Report for CCDS35947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35947.1 Public Mus musculus 10 Slc19a1 23 108 98 CCDS HistoryNCBI Gene:20509Re-query CCDS DB by CCDS ID:35947.1Re-query CCDS DB by GeneID:20509See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105410.9 ENSMUSP00000101050.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105410.9Link to Ensembl Protein Viewer:ENSMUSP00000101050.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105410Re-query CCDS DB by Protein ID:ENSMUSP00000101050
Original member Current member EBI ENSMUST00000144234.7 ENSMUSP00000116784.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144234.7Link to Ensembl Protein Viewer:ENSMUSP00000116784.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144234Re-query CCDS DB by Protein ID:ENSMUSP00000116784
Original member NCBI NM_001199271.1 NP_001186200.1 Updated not alive Link to Nucleotide Sequence:NM_001199271.1Link to Protein Sequence:NP_001186200.1Re-query CCDS DB by Nucleotide ID:NM_001199271Re-query CCDS DB by Protein ID:NP_001186200
Current member NCBI NM_001199271.2 NP_001186200.1 Accepted alive Link to Nucleotide Sequence:NM_001199271.2Link to Protein Sequence:NP_001186200.1Re-query CCDS DB by Nucleotide ID:NM_001199271Re-query CCDS DB by Protein ID:NP_001186200Link to BLAST:NP_001186200.1
Original member NCBI NM_031196.3 NP_112473.1 Updated not alive Link to Nucleotide Sequence:NM_031196.3Link to Protein Sequence:NP_112473.1Re-query CCDS DB by Nucleotide ID:NM_031196Re-query CCDS DB by Protein ID:NP_112473
Current member NCBI NM_031196.4 NP_112473.1 Accepted alive Link to Nucleotide Sequence:NM_031196.4Link to Protein Sequence:NP_112473.1Re-query CCDS DB by Nucleotide ID:NM_031196Re-query CCDS DB by Protein ID:NP_112473Link to BLAST:NP_112473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186200.1 512 P41438-1 512 100% 0 0
NP_112473.1 512 P41438-1 512 100% 0 0

Chromosomal Locations for CCDS 35947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 77038397 77038579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77041816 77042569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77042782 77042974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77044761 77044902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77049540 77049806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGTGCCCACTGGCCAGGTGGCAGAAAAGCAGGCATACGAAGAGCCCAGGCAGGACCACGAACTGAAAT
CCTGGCGATGCCTGGTGTTCTATCTCTGCTTCTTCGGCTTCATGGCCCAGTTGCGTCCTGGGGAAAGCTT
CATCACACCCTTCCTCCTGGAACGTAAATTCACCAAGGAGCAGGTGACTAACGAGATCATTCCGATGCTG
CCCTACTCCCACCTGGCTGTGCTGGTCCCGGTCTTCCTGCTCACCGACTACCTGCGATACAAGCCAGTCT
TGGTCCTGCAGTGCCTGAGCTTCGTGTGCGTGTGGCTGTTGCTGCTGCTGGGCACATCTGTCGTGCACAT
GCAACTCATGGAAGTCTTCTACAGCGTCACCATGGCGGCCCGCATCGCCTACTCCTCCTACATATTCTCC
CTGGTGCACCCCTCCCGCTACCAGCGCATGGCCAGCTACTCACGGGCGGCAGTACTGCTGGGAGTCTTCA
TCAGCTCTGTGTTGGGCCAGGCGCTGGTCACCGTAGGACATATAAGCACCTATACACTCAACTGTGTCTC
CCTGGGCTTCATCCTCTTCAGCCTGGTCCTCTCCCTCTTTCTAAAGCGCCCTAAGCGGAGCCTCTTTTTC
AACCGCAGTACGCTTGCGCGTGGAGCCTTGCCCTGTGAGCTGGATCAGATGCACCCGGGGCCTGACCGGC
CAGAAACCAGGAAACTAGATCGCATGCTGGGCACTTGCAGGGACTCCTTCCTGGTGCGCATGCTAAGTGA
ACTGGTGGAAAATGCTCGGCAACCACAGCTGCGTCTCTGGTGCCTCTGGTGGGTCTTCAACTCTTCAGGC
TACTACCTGATCACCTACTATGTGCATGTCCTGTGGAGAAGCACTGACAGCAGCCTCAGCTACAATGGCG
CCGTAGATGCCGCCTCCACACTGCTGAGCGCCATCACGTCCTTCTCCGCCGGCTTCCTGAGCATCCGCTG
GACTCTGTGGTCCAAGCTGGTCATCGCAGGTGTGATCGCCATCCAGGCCAGCCTGGTTTTCTGTATGTTC
CAGATCCGGGACATCTGGGTGTGCTACGTGACCTTTGTGCTTTTCCGTGGGGCCTACCAGTTCCTTGTGC
CCATTGCCACTTTTCAGATTGCGTCTTCCCTGTCTAAAGAGCTCTGTGCATTGGTCTTTGGGATCAACAC
TTTCCTAGCTACTGCGCTTAAGACCTGTATCACACTTGTGGTCTCTGACAAGCGGGGTCTGGGTCTCCAA
GTCCGTGATCAGTTCCGTATCTACTTCATATACTTCCTGATGCTGTCTATCACCTGCTTTGCCTGGGCGG
GGCTGGATGGCTTAAGGTACTGCCAGCGTGGTCGCCACCAGCCCCTGGCCCAGGCCCAGGAGCTGAGGAG
TCCCTTGGAGACTTCTGTGCAAGCGATAAGCCTACAGGATGGAGACCTAAGGGGACCGCAGCCCTCAGCG
CCACAGCTGCTCTCAGAGGATGGCATGGAGGACGACAGGGGAGACTTAAGAGTCGAAGCCAAGGCTTGA

Translation (512 aa):
MVPTGQVAEKQAYEEPRQDHELKSWRCLVFYLCFFGFMAQLRPGESFITPFLLERKFTKEQVTNEIIPML
PYSHLAVLVPVFLLTDYLRYKPVLVLQCLSFVCVWLLLLLGTSVVHMQLMEVFYSVTMAARIAYSSYIFS
LVHPSRYQRMASYSRAAVLLGVFISSVLGQALVTVGHISTYTLNCVSLGFILFSLVLSLFLKRPKRSLFF
NRSTLARGALPCELDQMHPGPDRPETRKLDRMLGTCRDSFLVRMLSELVENARQPQLRLWCLWWVFNSSG
YYLITYYVHVLWRSTDSSLSYNGAVDAASTLLSAITSFSAGFLSIRWTLWSKLVIAGVIAIQASLVFCMF
QIRDIWVCYVTFVLFRGAYQFLVPIATFQIASSLSKELCALVFGINTFLATALKTCITLVVSDKRGLGLQ
VRDQFRIYFIYFLMLSITCFAWAGLDGLRYCQRGRHQPLAQAQELRSPLETSVQAISLQDGDLRGPQPSA
PQLLSEDGMEDDRGDLRVEAKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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