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Report for CCDS3608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3608.1 Public Homo sapiens 4 CDS1 24 110 108 CCDS HistoryNCBI Gene:1040Re-query CCDS DB by CCDS ID:3608.1Re-query CCDS DB by GeneID:1040See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295887.6 ENSP00000295887.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295887.6Link to Ensembl Protein Viewer:ENSP00000295887.5Re-query CCDS DB by Nucleotide ID:ENST00000295887Re-query CCDS DB by Protein ID:ENSP00000295887
Original member Current member NCBI NM_001263.4 NP_001254.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001263.4Link to Protein Sequence:NP_001254.2Re-query CCDS DB by Nucleotide ID:NM_001263Re-query CCDS DB by Protein ID:NP_001254Link to BLAST:NP_001254.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254.2 461 Q92903 461 100% 0 0

Chromosomal Locations for CCDS 3608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 84583402 84583518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84604243 84604370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84609429 84609525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84617564 84617661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84619394 84619533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84631819 84631877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84633857 84633939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84635264 84635351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84638924 84638992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84640838 84640990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84643024 84643143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84645222 84645325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84648557 84648686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGTTGGAGCTGAGGCACCGGGGAAGCTGCCCCGGCCCCAGGGAAGCGGTGTCGCCGCCACACCGCGAGG
GAGAGGCGGCCGGCGGCGACCACGAAACCGAGAGCACCAGCGACAAAGAAACAGATATTGATGACAGATA
TGGAGATTTGGATTCCAGAACAGATTCTGATATTCCGGAAATTCCACCATCCTCAGATAGAACCCCTGAG
ATTCTCAAAAAAGCTCTATCTGGTTTATCTTCAAGGTGGAAAAACTGGTGGATACGTGGAATTCTCACTC
TAACTATGATCTCGTTGTTTTTCCTGATCATCTATATGGGATCCTTCATGCTGATGCTTCTTGTTCTGGG
CATCCAAGTGAAATGCTTCCATGAAATTATCACTATAGGTTATAGAGTCTATCATTCTTATGATCTACCA
TGGTTTAGAACACTAAGTTGGTACTTTCTATTGTGTGTAAACTACTTTTTCTATGGAGAGACTGTAGCTG
ATTATTTTGCTACATTTGTTCAAAGAGAAGAACAACTTCAGTTCCTCATTCGCTACCATAGATTTATATC
ATTTGCCCTCTATCTGGCAGGTTTCTGCATGTTTGTACTGAGTTTGGTGAAGAAACATTATCGTCTGCAG
TTTTATATGTTCGCATGGACTCATGTCACTTTACTGATAACTGTCACTCAGTCACACCTTGTCATCCAAA
ATCTGTTTGAAGGCATGATATGGTTCCTTGTTCCAATATCAAGTGTTATCTGCAATGACATAACTGCTTA
CCTTTTTGGATTTTTTTTTGGGAGAACTCCATTAATTAAGTTGTCTCCTAAAAAGACTTGGGAAGGATTC
ATTGGTGGTTTCTTTTCCACAGTTGTGTTTGGATTCATTGCTGCCTATGTGTTATCCAAATACCAGTACT
TTGTCTGCCCAGTGGAATACCGAAGTGATGTAAACTCCTTCGTGACAGAATGTGAGCCCTCAGAACTTTT
CCAGCTTCAGACTTACTCACTTCCACCCTTTCTAAAGGCAGTCTTGAGACAGGAAAGAGTGAGCTTGTAC
CCTTTCCAGATCCACAGCATTGCACTGTCAACCTTTGCATCTTTAATTGGCCCATTTGGAGGCTTCTTTG
CTAGTGGATTCAAAAGAGCCTTCAAAATCAAGGATTTTGCAAATACCATTCCTGGACATGGTGGGATAAT
GGACAGATTTGATTGTCAGTATTTGATGGCAACTTTTGTACATGTGTACATCACAAGTTTTATAAGGGGC
CCAAATCCCAGCAAAGTGCTACAGCAGTTGTTGGTGCTTCAACCTGAACAGCAGTTAAATATATATAAAA
CCCTGAAGACTCATCTCATTGAGAAAGGAATCCTACAACCCACCTTGAAGGTATAA

Translation (461 aa):
MLELRHRGSCPGPREAVSPPHREGEAAGGDHETESTSDKETDIDDRYGDLDSRTDSDIPEIPPSSDRTPE
ILKKALSGLSSRWKNWWIRGILTLTMISLFFLIIYMGSFMLMLLVLGIQVKCFHEIITIGYRVYHSYDLP
WFRTLSWYFLLCVNYFFYGETVADYFATFVQREEQLQFLIRYHRFISFALYLAGFCMFVLSLVKKHYRLQ
FYMFAWTHVTLLITVTQSHLVIQNLFEGMIWFLVPISSVICNDITAYLFGFFFGRTPLIKLSPKKTWEGF
IGGFFSTVVFGFIAAYVLSKYQYFVCPVEYRSDVNSFVTECEPSELFQLQTYSLPPFLKAVLRQERVSLY
PFQIHSIALSTFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVHVYITSFIRG
PNPSKVLQQLLVLQPEQQLNIYKTLKTHLIEKGILQPTLKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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