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Report for CCDS36156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36156.1 Public Mus musculus 11 Slc36a1 23 108 98 CCDS HistoryNCBI Gene:215335Re-query CCDS DB by CCDS ID:36156.1Re-query CCDS DB by GeneID:215335See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36156.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020499.13 ENSMUSP00000020499.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020499.13Link to Ensembl Protein Viewer:ENSMUSP00000020499.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020499Re-query CCDS DB by Protein ID:ENSMUSP00000020499
Original member Current member EBI ENSMUST00000108867.1 ENSMUSP00000104495.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108867.1Link to Ensembl Protein Viewer:ENSMUSP00000104495.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108867Re-query CCDS DB by Protein ID:ENSMUSP00000104495
Original member Current member EBI ENSMUST00000108872.8 ENSMUSP00000104500.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108872.8Link to Ensembl Protein Viewer:ENSMUSP00000104500.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108872Re-query CCDS DB by Protein ID:ENSMUSP00000104500
Original member Current member NCBI NM_153139.4 NP_694779.3 Accepted alive Link to Nucleotide Sequence:NM_153139.4Link to Protein Sequence:NP_694779.3Re-query CCDS DB by Nucleotide ID:NM_153139Re-query CCDS DB by Protein ID:NP_694779Link to BLAST:NP_694779.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694779.3 475 Q8K4D3 475 100% 0 0

Chromosomal Locations for CCDS 36156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 55213935 55214074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55219008 55219098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55219580 55219668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55220376 55220471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55221997 55222081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55223599 55223817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55224955 55225053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55225966 55226132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55228187 55228356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55232367 55232638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGTCCACACAGAGGCTTCGGAACGAAGACTATCATGACTACAGTTCCACAGACGTGAGCCCCGAGGAGA
GCCCATCTGAAGGCCTTGGCAGCTTCTCCCCCGGCTCCTACCAACGCTTAGGAGAGAACAGTAGCATGAC
ATGGTTCCAGACCCTGATCCACCTGCTGAAAGGCAACATTGGCACCGGACTGCTGGGGCTGCCTCTGGCA
GTGAAGAACGCAGGCCTCCTGTTGGGTCCTCTCAGCCTGCTGGTGATTGGTATCGTGGCCGTGCACTGCA
TGGGTATCCTGGTGAAGTGTGCTCATCACTTATGTCGTAGACTGAACAAACCCTTTTTGGACTATGGGGA
CACGGTGATGTATGGACTAGAATGCAGCCCCAGCACCTGGGTCCGGAACCACTCCCACTGGGGAAGGCGC
ATCGTGGACTTCTTCCTCATCGTCACTCAGCTGGGATTCTGCTGTGTCTACTTCGTGTTTCTGGCGGACA
ACTTTAAGCAGGTGATAGAGGCAGCCAATGGGACCACCACCAACTGCAACAACAATGTGACCGTGATCCC
GACGCCCACCATGGACTCTCGACTCTACATGCTCTCCTTCCTGCCCTTCCTGGTGTTGCTGTCTTTCATC
AGGAACCTGCGTGTGTTGTCCATCTTCTCCCTGCTGGCCAACATCAGCATGTTCGTCAGCCTGATCATGA
TATACCAGTTCATTGTCCAGAGGATCCCAGACCCCAGCCACCTCCCCTTGGTGGCTCCATGGAAGACCTA
CCCTCTGTTCTTTGGCACAGCGATTTTTGCTTTTGAAGGCATTGGAGTGGTTCTACCCCTTGAGAACAAA
ATGAAGGACTCACAGAAATTTCCATTGATTCTGTATTTGGGGATGGCTATCATCACTGTACTCTACATCA
GCCTGGGGAGCCTGGGGTACCTGCAATTTGGAGCTAATATCAAGGGCAGCATCACCCTCAACCTGCCCAA
CTGCTGGTTGTACCAGTCGGTGAAGCTGCTGTACTCCATAGGCATCTTCTTCACCTATGCCCTCCAGTTC
TATGTCGCAGCTGAGATCATCATCCCGGCCATTGTGTCCCGAGTGCCTGAGCATTTCGAGCTGATGGTGG
ACCTTTGTGTGCGCACCGCCATGGTCTGTGTGACATGTGTGCTGGCCATCCTCATCCCACGCCTGGACCT
GGTCATCTCCCTGGTGGGCTCTGTGAGCAGCAGCGCCCTGGCCCTCATCATCCCGCCCCTGCTGGAGGTG
GTCACCTACTATGGAGAGGGCATTAGCCCCCTGACCGTCACCAAGGATGCCCTCATCAGCATCCTGGGCT
TCGTGGGCTTCGTGGTGGGGACCTACGAGTCTCTGTGTGAGCTGATCCAGCCAAGCCATAGCGACTCCTC
TACCAATTCCACCAGTGCCTTCATATAA

Translation (475 aa):
MSTQRLRNEDYHDYSSTDVSPEESPSEGLGSFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLGLPLA
VKNAGLLLGPLSLLVIGIVAVHCMGILVKCAHHLCRRLNKPFLDYGDTVMYGLECSPSTWVRNHSHWGRR
IVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNVTVIPTPTMDSRLYMLSFLPFLVLLSFI
RNLRVLSIFSLLANISMFVSLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGVVLPLENK
MKDSQKFPLILYLGMAIITVLYISLGSLGYLQFGANIKGSITLNLPNCWLYQSVKLLYSIGIFFTYALQF
YVAAEIIIPAIVSRVPEHFELMVDLCVRTAMVCVTCVLAILIPRLDLVISLVGSVSSSALALIIPPLLEV
VTYYGEGISPLTVTKDALISILGFVGFVVGTYESLCELIQPSHSDSSTNSTSAFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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