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Report for CCDS36194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36194.1 Public Mus musculus 11 Sat2 23 108 98 CCDS HistoryNCBI Gene:69215Re-query CCDS DB by CCDS ID:36194.1Re-query CCDS DB by GeneID:69215See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092969.1 ENSMUSP00000090647.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092969.1Link to Ensembl Protein Viewer:ENSMUSP00000090647.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000092969Re-query CCDS DB by Protein ID:ENSMUSP00000090647
Original member Current member EBI ENSMUST00000108656.8 ENSMUSP00000104296.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108656.8Link to Ensembl Protein Viewer:ENSMUSP00000104296.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108656Re-query CCDS DB by Protein ID:ENSMUSP00000104296
Original member Current member NCBI NM_001356468.1 NP_001343397.1 Accepted alive Link to Nucleotide Sequence:NM_001356468.1Link to Protein Sequence:NP_001343397.1Re-query CCDS DB by Nucleotide ID:NM_001356468Re-query CCDS DB by Protein ID:NP_001343397Link to BLAST:NP_001343397.1
Original member Current member NCBI NM_026991.3 NP_081267.1 Accepted alive Link to Nucleotide Sequence:NM_026991.3Link to Protein Sequence:NP_081267.1Re-query CCDS DB by Nucleotide ID:NM_026991Re-query CCDS DB by Protein ID:NP_081267Link to BLAST:NP_081267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343397.1 170 Q6P8J2 170 100% 0 0
NP_081267.1 170 Q6P8J2 170 100% 0 0

Chromosomal Locations for CCDS 36194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69622267 69622332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69622493 69622544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69622707 69622790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69622860 69622961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69623112 69623152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69623491 69623658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGCTTCCACGCGAATCCGAGAGGCCAGGGAGAGCGATTGTGGAGACATTATGAGGATGATCCGGGAAC
TGGCAGAGTTCGAGAAACTGTCCCATCAGGTGAAGATCAGTGAAGAAGCTCTGCGAGCAGATGGCTTTGG
AGAGAACCCTTTCTTTCACTGTTTGGTGGCAGAGATTATCCCAGCACCTGGGGAGTCACAAGGGTCCCTT
GTGGTGGGCTATGGGCTGTACTACTTCATCTATAGCACATGGACCGGACGAAACGTTTATCTGGAAGACA
TCTATGTGATGCCGCAATATCGGGGTCAAGGGATTGGTACCAAAATAATCAAAAAGGTGGCTGAGGTTGC
CCTGAATAAGGGTTGCTCCCAGTTCCGCCTGGCAGTTCTGGATTGGAACAAGAAGGCCGTGAACTTGTAC
AAATTTCTAGGGGCTCAAGATCTGACTGAATCGGAAGGCTGGCTCTCCTTTCGATTTGAAGGCGAGGCAA
TGAGGGAGTTGGCAGGACGCTGA

Translation (170 aa):
MASTRIREARESDCGDIMRMIRELAEFEKLSHQVKISEEALRADGFGENPFFHCLVAEIIPAPGESQGSL
VVGYGLYYFIYSTWTGRNVYLEDIYVMPQYRGQGIGTKIIKKVAEVALNKGCSQFRLAVLDWNKKAVNLY
KFLGAQDLTESEGWLSFRFEGEAMRELAGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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