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Report for CCDS36428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36428.1 Public Mus musculus 12 Dld 23 108 98 CCDS HistoryNCBI Gene:13382Re-query CCDS DB by CCDS ID:36428.1Re-query CCDS DB by GeneID:13382See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110857.4 ENSMUSP00000106481.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110857.4Link to Ensembl Protein Viewer:ENSMUSP00000106481.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110857Re-query CCDS DB by Protein ID:ENSMUSP00000106481
Original member Current member NCBI NM_007861.5 NP_031887.2 Accepted alive Link to Nucleotide Sequence:NM_007861.5Link to Protein Sequence:NP_031887.2Re-query CCDS DB by Nucleotide ID:NM_007861Re-query CCDS DB by Protein ID:NP_031887Link to BLAST:NP_031887.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031887.2 509 O08749 509 100% 0 0

Chromosomal Locations for CCDS 36428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31332177 31332242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31332339 31332428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31333425 31333562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31333867 31334056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31334613 31334783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31335466 31335656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31340280 31340381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31340864 31341007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31341378 31341478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31342744 31342813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31343375 31343443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31344823 31344902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31349597 31349675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31351301 31351339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGCAGAGCTGGAGTCGTGTGTACCGCTCCTTGGCCAAGAAAGGCCATTTCAATCGGATATCTCATGGCC
TA
CAAGGAGTTTCTTCAGTTCCTTTAAGAACTTATGCAGATCAACCAATTGAGGCTGACGTGACAGTGAT
A
GGTTCTGGCCCTGGAGGATATGTTGCTGCCATCAAATCTGCCCAGTTAGGCTTTAAGACAGTCTGCATT
GAG
AAAAATGAGACACTAGGTGGAACATGCTTGAACGTTGGTTGTATTCCTTCAAAGGCTTTATTAAATA
AT
TCTCATTATTACCATATGGCCCACGGAAAAGATTTTGCATCTAGGGGAATTGAAATACCAGAAGTTCG
C
TTGAATTTAGAGAAGATGATGGAGCAGAAGCATTCTGCAGTAAAAGCATTAACAGGGGGAATTGCTCAC
TTA
TTCAAACAAAATAAGGTTGTTCACGTCAATGGATTTGGAAAGATAACCGGCAAGAATCAAGTTACAG
CT
ACAAAAGCCGATGGCAGCACTCAGGTTATTGATACCAAAAACATCCTTGTAGCTACGGGCTCAGAAGT
T
ACTCCTTTTCCTGGAATCACGATCGATGAAGATACTATAGTGTCATCTACAGGAGCTTTATCCTTAAAA
AAA
GTTCCAGAGAAGCTGGTTGTTATTGGGGCAGGAGTAATTGGTGTGGAACTGGGTTCAGTTTGGCAAA
GA
CTTGGTGCAGATGTGACAGCAGTTGAATTTTTGGGTCATGTGGGTGGAATTGGAATTGACATGGAGAT
A
TCAAAAAATTTTCAACGTATACTTCAGAGGCAAGGATTTAAGTTTAAACTGAATACAAAAGTTACTGGT
GCC
ACCAAGAAGTCAGATGGAAAAATTGATGTGTCTGTCGAAGCTGCTTCTGGTGGTAAAGCTGAAGTTA
TC
ACTTGTGATGTACTCTTGGTTTGCATTGGTCGGCGGCCCTTTACTCAGAATTTGGGACTAGAAGAGCT
T
GGAATTGAACTAGATCCCAAAGGTAGAATTCCAGTCAATAACAGATTTCAAACTAAAATTCCAAATATC
TAT
GCTATTGGAGATGTGGTCGCTGGTCCAATGTTGGCTCACAAAGCAGAAGATGAAGGCATCATCTGTG
TT
GAAGGGATGGCCGGCGGTGCTGTGCACATTGATTATAATTGTGTGCCATCAGTGATTTACACACACCC
C
GAGGTTGCTTGGGTTGGCAAATCGGAAGAACAGTTGAAAGAAGAGGGTATTGAGTTCAAAATTGGAAAA
TTC
CCCTTTGCTGCAAACAGCAGAGCTAAAACAAATGCTGACACAGATGGCATGGTGAAGATTCTTGGAC
AT
AAGTCAACAGATAGAGTGCTGGGAGCACATATTCTAGGACCAGGTGCTGGAGAAATGGTGAACGAGGC
G
GCCCTGGCATTGGAATATGGTGCTTCCTGTGAAGATATAGCTCGAGTCTGCCATGCGCATCCGACCTTA
TCA
GAGGCTTTTAGAGAAGCAAACTTGGCTGCAGCTTTTGGAAAACCAATCAACTTTTAA


Translation (509 aa):
MQSWSRVYRSLAKKGHFNRISHGLQGVSSVPLRTYADQPIEADVTVIGSGPGGYVAAIKSAQLGFKTVCI
E
KNETLGGTCLNVGCIPSK
ALLNNSHYYHMAHGKDFASRGIEIPEVRLNLEKMMEQKHSAVKALTGGIAH
L
FKQNK
VVHVNGFGKITGKNQVTATKADGSTQVIDTKNILVATGSEVTPFPGITIDEDTIVSSTGALSLK
K
VPEKLVVIGAGVIGVEL
GSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQRQGFKFKLNTKVTG
A
TKKSDGKIDV
SVEAASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPKGRIPVNNRFQTKIPNI
Y
AIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEE
GIEFKIGK
F
PFAANSRAKTNADTDGMVKILGHKSTDRVLGAHILGP
GAGEMVNEAALALEYGASCEDIARVCHAHPTL
S
EAFREANLAAAFGKPINF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser