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Report for CCDS36749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36749.1 Public Mus musculus 13 Arsb 23 108 98 CCDS HistoryNCBI Gene:11881Re-query CCDS DB by CCDS ID:36749.1Re-query CCDS DB by GeneID:11881See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 36749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091403.5 ENSMUSP00000088964.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091403.5Link to Ensembl Protein Viewer:ENSMUSP00000088964.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091403Re-query CCDS DB by Protein ID:ENSMUSP00000088964
Original member Current member NCBI NM_009712.3 NP_033842.3 Accepted alive Link to Nucleotide Sequence:NM_009712.3Link to Protein Sequence:NP_033842.3Re-query CCDS DB by Nucleotide ID:NM_009712Re-query CCDS DB by Protein ID:NP_033842Link to BLAST:NP_033842.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033842.3 534 P50429-1 534 99.8127% 0 1

Chromosomal Locations for CCDS 36749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 93771778 93772092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93790039 93790225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93794028 93794218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93807496 93807703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93862087 93862330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93880488 93880558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93939227 93939349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93940466 93940731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGGCAAGCTTAGCCCGTGCACTGGCAGGAGCCGGCCTGGAGGTCCCGGGCCGCAGCTGCCACTCTTGC
TGCTGCTGCTGCAGCTGCTGCTGCTGCTGCTGTCGCCGGCCCGGGCCTCCGGAGCTACCCAGCCTCCGCA
TGTGGTCTTCGTGCTGGCGGACGACCTGGGCTGGAACGACTTGGGTTTTCACGGCTCGGTCATCCGCACG
CCGCACCTGGATGCGCTGGCGGCCGGCGGCGTGGTCCTGGACAACTACTACGTGCAGCCGCTGTGCACGC
CCTCGCGGAGCCAGCTGCTCACCGGCCGCTATCAGATCCATTTGGGCTTACAGCATTACCTCATCATGAC
CTGTCAGCCCAGCTGTGTTCCCCTAGACGAAAAACTCCTGCCCCAGCTTTTAAAGGAAGCAGGCTATGCT
ACGCACATGGTCGGGAAATGGCACCTGGGGATGTACCGGAAAGAATGTCTGCCGACACGCCGAGGATTCG
ATACCTACTTCGGATACCTCCTAGGCAGTGAAGACTATTACACCCACGAGGCCTGTGCGCCGATTGAGTC
TTTGAATGGTACCCGCTGTGCGCTTGACTTAAGAGATGGTGAAGAACCTGCAAAAGAGTATAACAATATT
TACTCAACAAACATATTTACCAAAAGGGCTACAACCGTCATAGCTAACCACCCACCGGAGAAACCACTGT
TCCTCTACCTTGCTTTCCAGTCTGTCCACGATCCCCTGCAGGTCCCTGAGGAGTACATGGAGCCATATGG
CTTCATCCAAGATAAGCACAGACGTATTTATGCAGGGATGGTGTCCCTCATGGATGAAGCAGTGGGGAAC
GTCACCAAAGCCTTGAAAAGCCACGGGCTCTGGAACAACACGGTCTTCATCTTCTCCACAGATAACGGTG
GGCAGACTAGGTCTGGAGGCAACAACTGGCCACTCCGAGGAAGGAAGGGGACCCTGTGGGAAGGGGGCAT
CCGAGGAACGGGCTTCGTGGCAAGCCCCTTGCTGAAACAGAAAGGCGTGAAGAGCCGGGAACTCATGCAC
ATCACCGATTGGCTCCCCACACTCGTAGATCTGGCTGGGGGAAGCACTAATGGAACCAAACCTCTGGATG
GCTTCAACATGTGGAAGACAATCAGTGAAGGACACCCATCCCCGAGAGTGGAGCTGCTACACAACATCGA
TCAGGACTTTTTTGATGGCTTGCCATGTCCTGGCAAGAACATGACTCCAGCAAAGGACGATTCTTTTCCG
TTAGAACATTCTGCCTTTAACACGTCTATCCATGCTGGGATCAGATACAAAAATTGGAAACTCCTCACGG
GCCACCCAGGCTGTGGTTACTGGTTCCCGCCTCCGTCTCAGTCCAACGTCTCTGAGATACCTCCAGTGGA
CCCACCAACCAAGACTCTCTGGCTTTTTGATATCAATCAGGACCCTGAAGAAAGACACGACGTGTCCCGA
GAGCACCCCCACATCGTCCAGAACCTTCTTTCCCGCCTGCAGTACTACCATGAACATTCTGTGCCTTCTC
ACTTCCCACCCTTGGACCCCCGCTGCGATCCCAAGAGCACTGGTGTGTGGAGCCCCTGGATGTAG

Translation (534 aa):
MGKLSPCTGRSRPGGPGPQLPLLLLLLQLLLLLLSPARASGATQPPHVVFVLADDLGWNDLGFHGSVIRT
PHLDALAAGGVVLDNYYVQPLCTPSRSQLLTGRYQIHLGLQHYLIMTCQPSCVPLDEKLLPQLLKEAGYA
THMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYTHEACAPIESLNGTRCALDLRDGEEPAKEYNNI
YSTNIFTKRATTVIANHPPEKPLFLYLAFQSVHDPLQVPEEYMEPYGFIQDKHRRIYAGMVSLMDEAVGN
VTKALKSHGLWNNTVFIFSTDNGGQTRSGGNNWPLRGRKGTLWEGGIRGTGFVASPLLKQKGVKSRELMH
ITDWLPTLVDLAGGSTNGTKPLDGFNMWKTISEGHPSPRVELLHNIDQDFFDGLPCPGKNMTPAKDDSFP
LEHSAFNTSIHAGIRYKNWKLLTGHPGCGYWFPPPSQSNVSEIPPVDPPTKTLWLFDINQDPEERHDVSR
EHPHIVQNLLSRLQYYHEHSVPSHFPPLDPRCDPKSTGVWSPWM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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