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Report for CCDS3706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3706.1 Public Homo sapiens 4 NDST4 24 110 108 CCDS HistoryNCBI Gene:64579Re-query CCDS DB by CCDS ID:3706.1Re-query CCDS DB by GeneID:64579See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3706.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264363.7 ENSP00000264363.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264363.7Link to Ensembl Protein Viewer:ENSP00000264363.2Re-query CCDS DB by Nucleotide ID:ENST00000264363Re-query CCDS DB by Protein ID:ENSP00000264363
Original member Current member NCBI NM_022569.3 NP_072091.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022569.3Link to Protein Sequence:NP_072091.1Re-query CCDS DB by Nucleotide ID:NM_022569Re-query CCDS DB by Protein ID:NP_072091Link to BLAST:NP_072091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_072091.1 872 Q9H3R1-1 872 100% 0 0

Chromosomal Locations for CCDS 3706.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 114827816 114827935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114829790 114829892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114833606 114833715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114839378 114839548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114845823 114845997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114848215 114848338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114852725 114852821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114870768 114870950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114935206 114935334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114937318 114937503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114970430 114970584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 114977187 114977274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115076059 115077036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2619 nt):
ATGAATCTTATTGTGAAACTTCGGAGAAGTTTTCGAACATTGATTGTTCTCTTAGCTACCTTTTGCTTGG
TGAGCATTGTCATTTCTGCCTATTTTCTCTACTCTGGCTACAAACAGGAAATGACACTTATTGAAACCAC
TGCAGAAGCAGAATGCACTGACATCAAAATTCTACCATATAGGTCAATGGAGCTGAAAACAGTTAAACCT
ATTGACACATCCAAAACGGACCCTACTGTCCTTCTCTTCGTGGAGAGCCAATACTCTCAACTCGGTCAAG
ATATCATAGCTATTTTGGAGTCCAGCCGATTTCAGTACCACATGGTTATTGCCCCTGGAAAGGGAGATAT
ACCTCCTCTTACAGATAATGGCAAAGGGAAATATACTTTAGTTATTTATGAAAATATTCTGAAGTATGTC
AGCATGGACTCATGGAATCGAGAGCTTTTAGAAAAATACTGTGTGGAATACAGTGTTAGTATAATCGGTT
TTCATAAAGCCAATGAGAACAGCTTACCAAGTACACAATTAAAAGGCTTTCCGTTAAACCTTTTCAATAA
TCTAGCTCTAAAGGACTGTTTTGTTAACCCTCAATCTCCTTTGCTGCATATTACCAAAGCCCCCAAGGTT
GAGAAAGGCCCTCTTCCTGGGGAAGACTGGACTATTTTCCAATATAATCATTCAACCTACCAGCCTGTAC
TTTTAACTGAGTTACAGACAGAAAAATCCCTGTCATCCTTGTCTAGCAAAACACTCTTTGCAACGGTGAT
TCAGGATCTGGGGCTTCATGATGGAATTCAGAGAGTACTTTTTGGCAACAACTTGAACTTTTGGCTGCAC
AAGCTCATCTTCATAGATGCCATCTCCTTCTTGTCAGGGAAGAGGCTGACATTGTCCTTGGACAGGTACA
TCCTTGTGGACATTGATGATATATTTGTTGGGAAAGAGGGAACAAGGATGAATGTCAAAGATGTGAAGGC
ATTACTAGAGACTCAAAATTTACTGCGCACTCAGGTTGCAAATTTTACCTTCAACCTTGGATTTTCAGGG
AAGTTTTACCACACAGGGACTGAAGAGGAAGATGAAGGAGATGACCTTTTACTTCGGTCTGTGGATGAGT
TCTGGTGGTTTCCTCACATGTGGAGCCACATGCAGCCCCACCTCTTCCACAACGAGTCATCTTTAGTAGA
GCAGATGATTCTCAACAAGGAATTTGCACTGGAACATGGAATACCAATCAACATGGGCTATGCTGTGGCC
CCACATCACTCAGGGGTCTACCCGGTTCACATTCAGCTGTATGCAGCTTGGAAGAAGGTCTGGGGTATTC
AAGTCACCAGCACTGAAGAATATCCACATCTGAAACCTGCCCGGTACAGAAAGGGCTTCATTCACAATAG
CATCATGGTCCTCCCTCGACAGACTTGTGGGTTGTTCACTCACACTATTTTCTACAAAGAATATCCAGGA
GGACCCCAAGAACTGGATAAAAGTATCAGAGGAGGTGAACTTTTTCTCACAATCCTTCTAAACCCAATCA
GCATTTTCATGACCCATTTATCAAACTATGGAAATGACCGCCTAGGGTTATATACCTTTGTGAACTTGGT
CAACTTTGTGCAGAGCTGGACCAACCTGAAATTGCAAACTCTGCCTCCAGTGCAACTGGCCCACCAGTAT
TTTGAGCTCTTCCCTGAGCAGAAAGACCCTCTATGGCAGAATCCATGTGATGATAAACGACACAAAGACA
TCTGGTCCAGAGAGAAAACTTGTGACCACTTACCAAAATTTCTAGTAATTGGTCCACAAAAAACAGGAAC
AACTGCACTTTATTTATTTCTTCTTATGCATCCTTCAATCATCAGCAATCTCCCTAGTCCAAAGACATTT
GAGGAAGTTCAGTTCTTTAATGGCAACAACTATCACAAAGGAATAGACTGGTATATGGACTTTTTCCCTA
CACCATCCAATACTACAAGTGACTTTCTGTTTGAAAAGAGTGCTAATTACTTCCATTCGGAAGAAGCTCC
AAGACGAGCCGCATCTCTTGTCCCCAAAGCCAAGATCATCACCATCCTCATTGACCCCTCAGACAGGGCA
TACTCTTGGTACCAGCACCAACGATCACATGAAGATCCAGCTGCTCTGAGGTTCAATTTCTATGAAGTTA
TTTCAACAGGACATTGGGCTCCATCTGACTTAAAAACTTTGCAGAGAAGATGCCTAGTACCTGGATGGTA
TGCAGTCCACATAGAAAGATGGCTAACTTACTTTGCTACTTCTCAGTTGCTAATTATTGATGGACAGCAG
CTGAGATCTGACCCAGCTACTGTGATGGATGAAGTCCAGAAGTTTCTGGGAGTTACACCTCGTTATAATT
ACTCTGAAGCACTAACGTTTGATCCCCAAAAGGGTTTTTGGTGTCAATTACTGGAAGGAGGAAAGACAAA
ATGCCTTGGAAAAAGCAAAGGCCGAAAATATCCACCTATGGATCCAGAGTCTAGAACGTTCCTCTCTAAT
TACTACCGAGATCATAATGTGGAACTATCCAAACTGCTACACAGACTGGGACAGCCTCTGCCATCGTGGC
TGAGACAGGAACTGCAGAAAGTGAGATAG

Translation (872 aa):
MNLIVKLRRSFRTLIVLLATFCLVSIVISAYFLYSGYKQEMTLIETTAEAECTDIKILPYRSMELKTVKP
IDTSKTDPTVLLFVESQYSQLGQDIIAILESSRFQYHMVIAPGKGDIPPLTDNGKGKYTLVIYENILKYV
SMDSWNRELLEKYCVEYSVSIIGFHKANENSLPSTQLKGFPLNLFNNLALKDCFVNPQSPLLHITKAPKV
EKGPLPGEDWTIFQYNHSTYQPVLLTELQTEKSLSSLSSKTLFATVIQDLGLHDGIQRVLFGNNLNFWLH
KLIFIDAISFLSGKRLTLSLDRYILVDIDDIFVGKEGTRMNVKDVKALLETQNLLRTQVANFTFNLGFSG
KFYHTGTEEEDEGDDLLLRSVDEFWWFPHMWSHMQPHLFHNESSLVEQMILNKEFALEHGIPINMGYAVA
PHHSGVYPVHIQLYAAWKKVWGIQVTSTEEYPHLKPARYRKGFIHNSIMVLPRQTCGLFTHTIFYKEYPG
GPQELDKSIRGGELFLTILLNPISIFMTHLSNYGNDRLGLYTFVNLVNFVQSWTNLKLQTLPPVQLAHQY
FELFPEQKDPLWQNPCDDKRHKDIWSREKTCDHLPKFLVIGPQKTGTTALYLFLLMHPSIISNLPSPKTF
EEVQFFNGNNYHKGIDWYMDFFPTPSNTTSDFLFEKSANYFHSEEAPRRAASLVPKAKIITILIDPSDRA
YSWYQHQRSHEDPAALRFNFYEVISTGHWAPSDLKTLQRRCLVPGWYAVHIERWLTYFATSQLLIIDGQQ
LRSDPATVMDEVQKFLGVTPRYNYSEALTFDPQKGFWCQLLEGGKTKCLGKSKGRKYPPMDPESRTFLSN
YYRDHNVELSKLLHRLGQPLPSWLRQELQKVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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