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Report for CCDS37278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37278.1 Public Mus musculus 16 Prodh 23 108 98 CCDS HistoryNCBI Gene:19125Re-query CCDS DB by CCDS ID:37278.1Re-query CCDS DB by GeneID:19125See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003620.12 ENSMUSP00000003620.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003620.12Link to Ensembl Protein Viewer:ENSMUSP00000003620.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000003620Re-query CCDS DB by Protein ID:ENSMUSP00000003620
Original member NCBI NM_011172.2 NP_035302.2 Updated not alive Link to Nucleotide Sequence:NM_011172.2Link to Protein Sequence:NP_035302.2Re-query CCDS DB by Nucleotide ID:NM_011172Re-query CCDS DB by Protein ID:NP_035302
Current member NCBI NM_011172.3 NP_035302.2 Accepted alive Link to Nucleotide Sequence:NM_011172.3Link to Protein Sequence:NP_035302.2Re-query CCDS DB by Nucleotide ID:NM_011172Re-query CCDS DB by Protein ID:NP_035302Link to BLAST:NP_035302.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035302.2 599 Q9WU79 599 100% 0 0

Chromosomal Locations for CCDS 37278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18072176 18072363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18072450 18072538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18073555 18073653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18076242 18076417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18077444 18077590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18077791 18077883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18079187 18079268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18079912 18079991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18080166 18080282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18080463 18080527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18080926 18081075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18081531 18081565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18084547 18084755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18088888 18089157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGGCTCTCAAGCGCGTCTTCTTGCTGCGGTCGGTGGCACCACGCGTCGCTGCCCTCTCAACCAAACCGC
AAGCCCAGGAACAGCCTCCCGCGAGCCCTGAGGCTCTTCGGGGATGTGGGGCGGCCAAGGCTGTGCGGCC
GCCTGTGCCAGCCGTGGACTTCACCAACACGCAGGAGGCGTATCGCAGCCGGCGGAGTTGGGAGTTGGTG
CGCAACCTGCTAGTGCTGCGGCTGTGTGCGTCGCCGGTGCTGCTAGCGCACCACGAGCAGTTGTTCCAAG
TTGCCAGGAAGCTTCTGGGGCAAAGGATGTTCGAGAGATTGATGAAGATGACCTTCTATGGCCATTTTGT
GGCTGGCGAGGACCAGGAGTCTATCAGGCCTCTGATCCGGCACAACAAAGCCTTTGGTGTTGGCTTTATC
CTGGACTATGGAGTGGAGGAAGATCTGAGCCCTGAGGAGGCGGAGCGCAAAGAGATGGAGTCATGCACTT
CTGAAGCAGAGAGAGATGGCAGTGGAGCAAATAAGAGGGAGAAGCAGTATCAGGTGCACCCCGCCTTTGG
AGACCGCAGAGATGGTGTCATCAGTGCCCGCACCTACTTCTATGCCAATGAAGCCAAGTGTGACAACTAC
ATGGAGAACTTACTGCAGTGCATCAAGGCCTCAGGTGGAGCCAGTGATGGTGGTTTCTCAGCCATTAAGC
TCACTGCACTGGGGAGACCACAGTTTCTGCTGCAGTTCTCAGACGTGCTGACCAGGTGGAGACGGTTCTT
CCATCAAATGGCTGCAGAGCAGGGACAGGCTGGGCGTGCTGCTGTAGACACAAAGCTGGAGGTGGCGGTG
CTCCAGGACAGCATCGCAAAGATGGGCATCGCATCCAGGGCTGAGATTGAAGGGTGGTTCACGCCAGAGA
CGCTGGGAGTGTCTGGCACCGTGGACTTGCTGGACTGGAACAGCCTCATTGACAGCAGGACCCGGCTCTC
CAGGCACTTGGTGGTCCCCAATGTGCAGACTGGCCAGCTGGAGCCCCTGCTGTCACGGTTCACTGAGGAG
GAAGAGCAGCAGATGAAAAGGATGCTGCAGAGGATGGATGTACTGGCCAAGAAAGCAAAAGAGGCAGGTG
TGCGCCTGATGATTGATGCTGAGCAGAGCTACTTCCAACCAGCCATCAGCCGCCTGACCCTGGAGATGCA
GCGCAGGTTCAATGTGGATAAGCCGTTCATCTTCAACACATTCCAGTGCTACCTCAAGGATGCCTATGAC
AATGTGACCTTGGATATGGAACTGGCTCGCCGTGAGGGCTGGTGTTTTGGGGCCAAGCTGGTACGTGGTG
CATACATGGCCCAAGAGCGTGTCAGGGCAGCAGAGATCGGTTATGAGGACCCCATCAACCCTACATATGA
AGCCACCAATGCTATGTACCACAGGTGCCTTAACTATGTTCTGGAGGAGCTGAAGCACAGCACCAAGGCA
GAGGTGATGGTGGCTTCCCACAACGAGGACACCGTGCACTTCACGTTGTGCAGGATGAAGGAGATAGGCC
TGCATCCTGCTGATGGTCAGGTGTGCTTCGGACAGCTGCTGGGGATGTGTGACCAAATCAGCTTCCCACT
AGGCCAGGCAGGCTTTCCTGTGTACAAGTATGTGCCCTATGGCCCTGTGATGGAGGTACTCCCTTACCTG
TCCCGCCGTGCCCTGGAGAACAGCAGCATCATGAAGGGTGCTCAGCGAGAGAGGCAGCTGCTATGGCAGG
AGCTCCGCAGGCGGCTGCGCACTGGCAGCCTCTTCCACCATCCGGCCTAG

Translation (599 aa):
MALKRVFLLRSVAPRVAALSTKPQAQEQPPASPEALRGCGAAKAVRPPVPAVDFTNTQEAYRSRRSWELV
RNLLVLRLCASPVLLAHHEQLFQVARKLLGQRMFERLMKMTFYGHFVAGEDQESIRPLIRHNKAFGVGFI
LDYGVEEDLSPEEAERKEMESCTSEAERDGSGANKREKQYQVHPAFGDRRDGVISARTYFYANEAKCDNY
MENLLQCIKASGGASDGGFSAIKLTALGRPQFLLQFSDVLTRWRRFFHQMAAEQGQAGRAAVDTKLEVAV
LQDSIAKMGIASRAEIEGWFTPETLGVSGTVDLLDWNSLIDSRTRLSRHLVVPNVQTGQLEPLLSRFTEE
EEQQMKRMLQRMDVLAKKAKEAGVRLMIDAEQSYFQPAISRLTLEMQRRFNVDKPFIFNTFQCYLKDAYD
NVTLDMELARREGWCFGAKLVRGAYMAQERVRAAEIGYEDPINPTYEATNAMYHRCLNYVLEELKHSTKA
EVMVASHNEDTVHFTLCRMKEIGLHPADGQVCFGQLLGMCDQISFPLGQAGFPVYKYVPYGPVMEVLPYL
SRRALENSSIMKGAQRERQLLWQELRRRLRTGSLFHHPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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