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Report for CCDS37403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37403.1 Public Mus musculus 16 Slc5a3 23 108 98 CCDS HistoryNCBI Gene:53881Re-query CCDS DB by CCDS ID:37403.1Re-query CCDS DB by GeneID:53881See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113975.2 ENSMUSP00000109608.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113975.2Link to Ensembl Protein Viewer:ENSMUSP00000109608.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113975Re-query CCDS DB by Protein ID:ENSMUSP00000109608
Original member Current member NCBI NM_017391.3 NP_059087.2 Accepted alive Link to Nucleotide Sequence:NM_017391.3Link to Protein Sequence:NP_059087.2Re-query CCDS DB by Nucleotide ID:NM_017391Re-query CCDS DB by Protein ID:NP_059087Link to BLAST:NP_059087.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059087.2 718 Q9JKZ2 718 100% 0 0

Chromosomal Locations for CCDS 37403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 92077057 92079213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGAGGGCTGTACTGGAGGCAGCAGACATTGCCGTAGTGGCCCTGTATTTTATCCTGGTCATGTGCATTG
GCTTTTTTGCCATGTGGAAATCTAATAGAAGCACTGTGAGTGGATACTTCCTGGCCGGGCGCTCTATGAC
CTGGGTGGCGATTGGTGCCTCTCTGTTTGTGAGCAATATTGGGAGTGAACACTTCATTGGGCTGGCAGGA
TCTGGAGCAGCAAGTGGATTTGCAGTGGGCGCATGGGAATTCAATGCCTTACTGCTCTTGCAACTTCTGG
GATGGGTTTTCATCCCCATTTACATCCGGTCAGGGGTATATACCATGCCTGAATACTTGTCCAAGAGGTT
CGGTGGCCATAGGATTCAGGTCTATTTTGCAGCCTTGTCTCTGCTTCTCTATATCTTCACCAAGCTCTCA
GTGGATCTGTATTCAGGGGCCCTCTTTATCCAGGAGTCCTTGGGTTGGAACCTTTATGTGTCTGTCATCC
TGCTCATTGGCATGACTGCTCTGCTGACTGTCACCGGAGGCCTTGTTGCAGTGATCTACACAGACACTCT
GCAGGCCCTGCTCATGATCATTGGGGCGCTCACACTTATGGTTATTAGCATGGTGAAGATTGGAGGGTTT
GAGGAAGTTAAGAGAAGGTACATGTTGGCCTCACCTGATGTTGCTTCCATTTTGTTGAAGTACAACCTTT
CCAACACAAATGCTTGTATGGTCCATCCTAAGGCGAATGCCCTAAAAATGTTGAGAGACCCAACAGATGA
AGATGTTCCATGGCCTGGATTCATTCTTGGGCAAACCCCAGCCTCGGTATGGTACTGGTGTGCTGACCAA
GTCATCGTACAGAGGGTTCTAGCAGCCAAAAACATTGCTCATGCCAAAGGCTCCACTCTAATGGCTGGCT
TCTTGAAGCTTCTACCAATGTTTATCATAGTTGTACCAGGAATGATTTCCAGGATAGTGTTTGCTGATGA
GATAGCTTGCATCAACCCAGAACACTGCATGCAAGTGTGTGGAAGCAGAGCTGGCTGCTCCAATATTGCT
TACCCACGCCTGGTGATGACCTTGGTTCCTGTGGGCCTTCGGGGCCTGATGATGGCAGTGATGATTGCAG
CTCTGATGAGTGACTTGGACTCCATCTTTAACAGCGCCAGTACCATATTCACCCTCGATGTGTACAAACT
TATCCGCAAGAGTGCAAGCTCCCGGGAACTAATGATTGTGGGCAGGATATTTGTGGCTTTTATGGTTGTC
ATCAGCATAGCATGGGTGCCAATTATTGTGGAGATGCAAGGAGGCCAAATGTACCTTTACATCCAGGAGG
TGGCAGATTATCTGACTCCTCCCGTGGCAGCCCTCTTCCTTCTGGCAATTTTCTGGAAACGCTGCAATGA
GCAAGGGGCTTTTTATGGTGGAATGGCAGGCTTTGTTCTTGGAGCTGTCCGTTTGATACTGGCTTTTACC
TACCGTGCTCCTGAGTGTGATCAACCTGATAACAGGCCAGGCTTCATCAAAGACATCCATTATATGTACG
TGGCTACGGCATTATTTTGGATCACAGGACTCATTACTGTGATTGTTAGTCTTCTCACACCACCTCCCAC
AAAGGATCAGATTCGTACCACTACCTTTTGGTCAAAGAAGACCCTGGTGACAAAGGAGAGCTGTTCTCAG
AAAGACGAACCATACAAAATGCAAGAGAAGAGCATCCTGCAGTGCAGCGAGAATAGCGAAGTCATCAGCC
ATACTATTCCCAACGGGAAGTCTGAAGACAGCATTAAGGGACTGCAACCTGAAGACGTTAATCTGCTGGT
GACATGCCGAGAAGAGGGCAACCCAGTGGCTTCCATGGGTCATTCAGAGGCAGAAACACCAGTAGATGCT
TATTCCAATGGGCAAGCAGCTCTCATGGGTGAGAGAGAAAGAGAGAAGGAAACGGAAAATAGAAGCCGGT
ATTGGAAGTTCATAGACTGGTTTTGTGGCTTTAAGAGTAAAAGCCTTAGCAAGAGGAGCCTCAGAGACTT
GATGGATGAGGAGGCTGTGTGTTTACAAATGTTAGAAGAGACTCCACAAGTTAAAGTGATCCTAAACATT
GGACTTTTTGCTGTGTGTTCACTTGGAATTTTCATGTTTGTTTATTTCTCCTTATGA

Translation (718 aa):
MRAVLEAADIAVVALYFILVMCIGFFAMWKSNRSTVSGYFLAGRSMTWVAIGASLFVSNIGSEHFIGLAG
SGAASGFAVGAWEFNALLLLQLLGWVFIPIYIRSGVYTMPEYLSKRFGGHRIQVYFAALSLLLYIFTKLS
VDLYSGALFIQESLGWNLYVSVILLIGMTALLTVTGGLVAVIYTDTLQALLMIIGALTLMVISMVKIGGF
EEVKRRYMLASPDVASILLKYNLSNTNACMVHPKANALKMLRDPTDEDVPWPGFILGQTPASVWYWCADQ
VIVQRVLAAKNIAHAKGSTLMAGFLKLLPMFIIVVPGMISRIVFADEIACINPEHCMQVCGSRAGCSNIA
YPRLVMTLVPVGLRGLMMAVMIAALMSDLDSIFNSASTIFTLDVYKLIRKSASSRELMIVGRIFVAFMVV
ISIAWVPIIVEMQGGQMYLYIQEVADYLTPPVAALFLLAIFWKRCNEQGAFYGGMAGFVLGAVRLILAFT
YRAPECDQPDNRPGFIKDIHYMYVATALFWITGLITVIVSLLTPPPTKDQIRTTTFWSKKTLVTKESCSQ
KDEPYKMQEKSILQCSENSEVISHTIPNGKSEDSIKGLQPEDVNLLVTCREEGNPVASMGHSEAETPVDA
YSNGQAALMGEREREKETENRSRYWKFIDWFCGFKSKSLSKRSLRDLMDEEAVCLQMLEETPQVKVILNI
GLFAVCSLGIFMFVYFSL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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