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Report for CCDS3766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3766.1 Public Homo sapiens 4 MMAA 24 110 108 CCDS HistoryNCBI Gene:166785Re-query CCDS DB by CCDS ID:3766.1Re-query CCDS DB by GeneID:166785See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3766.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541599.5 ENSP00000442284.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541599.5Link to Ensembl Protein Viewer:ENSP00000442284.3Re-query CCDS DB by Nucleotide ID:ENST00000541599Re-query CCDS DB by Protein ID:ENSP00000442284
Original member Current member EBI ENST00000649156.2 ENSP00000497008.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649156.2Link to Ensembl Protein Viewer:ENSP00000497008.1Re-query CCDS DB by Nucleotide ID:ENST00000649156Re-query CCDS DB by Protein ID:ENSP00000497008
Original member Current member EBI ENST00000648388.1 ENSP00000497046.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648388.1Link to Ensembl Protein Viewer:ENSP00000497046.1Re-query CCDS DB by Nucleotide ID:ENST00000648388Re-query CCDS DB by Protein ID:ENSP00000497046
Original member Current member EBI ENST00000649704.1 ENSP00000497680.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649704.1Link to Ensembl Protein Viewer:ENSP00000497680.1Re-query CCDS DB by Nucleotide ID:ENST00000649704Re-query CCDS DB by Protein ID:ENSP00000497680
Original member Current member EBI ENST00000679563.1 ENSP00000506503.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679563.1Link to Ensembl Protein Viewer:ENSP00000506503.1Re-query CCDS DB by Nucleotide ID:ENST00000679563Re-query CCDS DB by Protein ID:ENSP00000506503
Original member Current member NCBI NM_001375644.1 NP_001362573.1 Accepted alive Link to Nucleotide Sequence:NM_001375644.1Link to Protein Sequence:NP_001362573.1Re-query CCDS DB by Nucleotide ID:NM_001375644Re-query CCDS DB by Protein ID:NP_001362573Link to BLAST:NP_001362573.1
Original member Current member NCBI NM_172250.3 NP_758454.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172250.3Link to Protein Sequence:NP_758454.1Re-query CCDS DB by Nucleotide ID:NM_172250Re-query CCDS DB by Protein ID:NP_758454Link to BLAST:NP_758454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362573.1 418 Q8IVH4 418 100% 0 0
NP_758454.1 418 Q8IVH4 418 100% 0 0

Chromosomal Locations for CCDS 3766.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 145639140 145639578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145642363 145642485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145645986 145646156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145651062 145651147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145653994 145654143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145655147 145655434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGCCCATGCTGCTACCACATCCTCACCAGCATTTCCTAAAAGGCCTTTTAAGAGCACCTTTCCGATGTT
ACCACTTCATCTTTCACTCAAGTACTCATCTCGGATCAGGAATCCCATGTGCTCAGCCGTTTAATTCTCT
TGGACTCCATTGTACAAAGTGGATGCTGCTGTCAGATGGCTTAAAGAGAAAATTATGTGTACAAACAACC
TTAAAGGACCACACAGAAGGACTTTCTGATAAAGAGCAAAGATTTGTGGATAAACTTTATACTGGTTTAA
TCCAAGGGCAAAGGGCCTGTTTAGCAGAGGCCATAACTCTTGTAGAATCAACTCACAGCAGGAAAAAGGA
GTTAGCCCAGGTGCTTCTTCAGAAAGTATTACTTTACCACAGAGAACAAGAACAATCAAATAAAGGAAAA
CCACTAGCATTTCGAGTAGGATTGTCTGGGCCCCCTGGTGCTGGAAAATCAACATTTATAGAATATTTTG
GAAAAATGCTTACTGAGAGAGGGCACAAATTATCTGTGCTAGCTGTGGACCCTTCTTCTTGTACTAGTGG
TGGATCACTCTTAGGTGATAAAACCCGAATGACTGAGTTATCAAGAGATATGAATGCATACATCAGGCCA
TCTCCTACTAGAGGAACTTTAGGAGGCGTGACAAGGACCACAAATGAAGCTATTCTGTTGTGTGAAGGAG
CGGGATATGACATAATTCTTATTGAAACCGTTGGTGTGGGTCAGTCGGAGTTTGCTGTTGCTGACATGGT
TGACATGTTTGTTTTACTACTGCCACCAGCAGGAGGAGATGAGCTGCAGGGTATCAAAAGGGGTATAATC
GAGATGGCAGATCTGGTAGCTGTAACTAAATCTGATGGAGACTTGATTGTGCCAGCTCGAAGGATACAAG
CGGAATATGTGAGTGCACTGAAATTACTCCGCAAACGTTCACAAGTCTGGAAACCAAAGGTAATTCGTAT
TTCTGCCCGAAGTGGAGAGGGGATCTCTGAAATGTGGGATAAAATGAAAGATTTCCAGGACCTAATGCTT
GCCAGTGGGGAGCTGACTGCCAAACGACGGAAGCAACAGAAAGTTTGGATGTGGAATCTCATTCAGGAAA
GTGTGTTAGAGCATTTCAGGACCCACCCCACAGTCCGGGAACAGATTCCACTTCTGGAACAAAAGGTTCT
CATTGGGGCCCTGTCCCCAGGACTAGCAGCAGACTTCTTGTTAAAAGCTTTTAAAAGCAGAGACTAA

Translation (418 aa):
MPMLLPHPHQHFLKGLLRAPFRCYHFIFHSSTHLGSGIPCAQPFNSLGLHCTKWMLLSDGLKRKLCVQTT
LKDHTEGLSDKEQRFVDKLYTGLIQGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGK
PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRP
SPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGII
EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLML
ASGELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVREQIPLLEQKVLIGALSPGLAADFLLKAFKSRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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