NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37709.1 Public Mus musculus 17 Haao 23 108 98 CCDS HistoryNCBI Gene:107766Re-query CCDS DB by CCDS ID:37709.1Re-query CCDS DB by GeneID:107766See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000687.8 ENSMUSP00000000687.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000687.8Link to Ensembl Protein Viewer:ENSMUSP00000000687.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000687Re-query CCDS DB by Protein ID:ENSMUSP00000000687
Original member Current member NCBI NM_025325.2 NP_079601.1 Accepted alive Link to Nucleotide Sequence:NM_025325.2Link to Protein Sequence:NP_079601.1Re-query CCDS DB by Nucleotide ID:NM_025325Re-query CCDS DB by Protein ID:NP_079601Link to BLAST:NP_079601.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079601.1 286 Q78JT3 286 100% 0 0

Chromosomal Locations for CCDS 37709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 83831643 83831721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83831827 83831909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83832327 83832395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83834779 83834924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83835191 83835234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83835475 83835564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83838472 83838578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83838801 83838884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83843196 83843274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83846637 83846716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGAACGCCGTGTGAGAGTGAAGTCTTGGGTAGAAGAGAATCGGGCCTCCTTTCAGCCTCCGGTTTGCA
ACAAGCTTATGCACCAGGAGCAGCTCAAAATCATGTTCGTTGGAGGCCCCAATACCAGGAAGGATTATCA
CATTGAAGAGGGTGAGGAGGTGTTTTACCAGCTGGAGGGAGACATGATACTACGAGTCCTGGAGCAGGGG
CAACACCGGGACGTGCCTATACGGCAGGGAGAGATATTCCTCCTGCCTGCCAGGGTGCCCCACTCCCCGC
AGAGGTTTGCCAACACCATGGGGCTGGTGATTGAGAGAAGGCGGCTGGAGAGCGAGCTGGATGGGCTGAG
GTATTACGTGGGGGACACTGAGGATGTCCTCTTCGAGAAATGGTTCCACTGTAAGGACCTTGGCACGCAG
TTAGCACCCATCATCCAAGAGTTCTTCCACTCTGAGCAATACCGAACAGGAAAACCCAACCCTGACCAGC
TGCTCAAGGAGCTGCCATTCCCGCTGAATACACGGTCCATCATGAAGCCCATGTCATTGAAGGCCTGGCT
GGATGGCCACTCCAGGGAGCTTCAGGCAGGCACATCCCTAAGCCTGTTTGGGGACAGCTATGAGACCCAG
GTCATTGCCCACGGACAAGGTAGCAGCAAAGGCCCAAGGCAGGATGTGGATGTGTGGCTGTGGCAACAGG
AGGGCTCCTCTAAGGTGACAATGGGAGGGCAGTGTATAGCCCTGGCCCCAGATGACAGCCTGCTGGTGCC
TGCTGGAACCTCGTATGTGTGGGAGCGAGCACAAGGCTCTGTGGCCTTGTCTGTGACACAAGACCCTGCC
CGTAAGAAGCCATGGTGGTGA

Translation (286 aa):
MERRVRVKSWVEENRASFQPPVCNKLMHQEQLKIMFVGGPNTRKDYHIEEGEEVFYQLEGDMILRVLEQG
QHRDVPIRQGEIFLLPARVPHSPQRFANTMGLVIERRRLESELDGLRYYVGDTEDVLFEKWFHCKDLGTQ
LAPIIQEFFHSEQYRTGKPNPDQLLKELPFPLNTRSIMKPMSLKAWLDGHSRELQAGTSLSLFGDSYETQ
VIAHGQGSSKGPRQDVDVWLWQQEGSSKVTMGGQCIALAPDDSLLVPAGTSYVWERAQGSVALSVTQDPA
RKKPWW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH