NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37711.1 Public Mus musculus 17 Slc3a1 23 108 98 CCDS HistoryNCBI Gene:20532Re-query CCDS DB by CCDS ID:37711.1Re-query CCDS DB by GeneID:20532See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024944.8 ENSMUSP00000024944.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024944.8Link to Ensembl Protein Viewer:ENSMUSP00000024944.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024944Re-query CCDS DB by Protein ID:ENSMUSP00000024944
Original member Current member NCBI NM_009205.2 NP_033231.2 Accepted alive Link to Nucleotide Sequence:NM_009205.2Link to Protein Sequence:NP_033231.2Re-query CCDS DB by Nucleotide ID:NM_009205Re-query CCDS DB by Protein ID:NP_033231Link to BLAST:NP_033231.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033231.2 685 Q91WV7 685 100% 0 0

Chromosomal Locations for CCDS 37711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 85028432 85028858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85032443 85032622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85032759 85032913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85037170 85037295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85046639 85046758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85048847 85048971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85051882 85052077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85059716 85059883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85060803 85060919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85063636 85064079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGGATGAGGACAAAGGCAAGAGAGACCCCATCCAAATGAGTTTGAAGGGATGCCGAACCAATAACGGGT
TTGTCCAAAATGAAGACATTCCGGAGCAGGACCCAGACCCAGGCTCCAGGGACACCCCACAGCCCAACGC
CGTGAGTATCCCTGCTCCAGAGGAGCCTCACCTAAAGGCGGTGCGGCCCTATGCAGGGATGCCCAAGGAA
GTACTCTTCCAGTTCTCCGGCCAGGCTCGCTACCGGGTGCCCCGAGAGATCCTCTTCTGGCTCACCGTGG
TTTCCGTGTTCCTGCTCATTGGAGCCACCATAGCCATCATCGTCATCTCTCCAAAATGCCTTGACTGGTG
GCAAGCAGGTCCCATATACCAGATCTACCCGAGGTCTTTTAAGGACAGTGACAAGGATGGGAATGGAGAC
CTGAAAGGTATCCAGGAGAAGCTGGACTATATCACTGCTTTAAACATAAAGACTCTTTGGATCACTTCCT
TTTATAAATCATCTTTGAAAGACTTCAGATACGCTGTTGAGGATTTCAAAGAAATTGACCCTATTTTTGG
AACAATGAAAGATTTTGAGAATTTGGTTGCTGCCATCCATGACAAAGGTTTAAAATTAATAATTGATTTC
ATACCAAACCACACTAGTGACAAACATCCTTGGTTCCAATCGAGTAGGACACGGAGCGGAAAATACACCG
ATTACTACATCTGGCACAACTGTACCCATGTCAACGGTGTAACCACCCCTCCCAACAACTGGCTGAGTGT
GTATGGAAACTCCAGCTGGCACTTTGATGAAGTACGAAAGCAATGTTATTTTCACCAGTTTTTGAAAGAG
CAACCAGATTTAAATTTCCGAAATCCTGCTGTTCAAGAGGAAATAAAGGAAATAATAACGTTCTGGCTCT
CGAAGGGTGTTGATGGGTTTAGTTTTGATGCAGTTAAATTTCTTCTGGAAGCGAAGGATCTGAGAAATGA
AATCCAAGTGAATACATCCCAAATTCCGGACACGGTCACCCACTACTCAGAGCTGTACCATGACTTCACC
ACAACTCAGGTGGGAATGCATGACATCGTCCGAGACTTCCGGCAGACCATGAACCAGTACAGCAGGGAGC
CTGGCAGATACCGGTTCATGGGGGCCGAAGCCTCAGCTGAGAGCATCGAGAGGACCATGATGTACTATGG
CTTGCCATTTATCCAGGAAGCCGACTTTCCTTTCAACAAGTACTTCACCACAATAGGCACTCTCTCTGGG
CATACTGTCTATGAAGTTATCACATCCTGGATGGAAAACATGCCTGAAGGAAAATGGCCCAATTGGATGA
CTGGCGGACCGGAGACTCCTCGGCTGACTTCTCGAGTAGGGAGTGAGTATGTCAACGCCATGCACATGCT
CCTGTTCACACTCCCGGGAACGCCCATCACTTACTATGGAGAGGAAATCGGGATGGGAGACATTTCCGTT
ACAAATTTCAACGAGAGCTATGATAGTACTACCCTTGTCTCCAAGTCACCGATGCAGTGGGACAATAGTT
CCAATGCTGGGTTTACTGAGGCCAACCACACCTGGCTACCCACAAACTCTGACTACCACACCGTCAATGT
GGATGTCCAAAAGACCCAGCCGAGCTCAGCACTGAGGCTGTATCAGGATCTGAGTCTACTCCATGCCACA
GAGCTGGTCCTCAGCCGGGGCTGGTTTTGCCTCTTGAGAGACGACAGTCACTCTGTGGTGTACACAAGAG
AGCTGGACGGCATAGATAACGTCTTCCTCGTGGTTCTGAATTTTGGAGAATCATCAACTGTGCTAAATCT
ACAGGGGATCATTTCAGATCTTCCTCCAGAGCTGAGAATAAGGTTAAGTACCAACTCAGCCTCCAAAGGC
AGTGCTGTTGACACCCGTGCCATTTCTCTGGAGAAGGGAGAGGGCCTGGTCTTGGAGCACAGCACGAAGG
CTCCCCTCCATCAGCAGGCCGCTTTCAGAGACAGATGCTTTGTTTCCAGTCGGGCGTGCTACTCCAGTGC
ACTGGACATCCTCTATAGCTCGTGTTAG

Translation (685 aa):
MDEDKGKRDPIQMSLKGCRTNNGFVQNEDIPEQDPDPGSRDTPQPNAVSIPAPEEPHLKAVRPYAGMPKE
VLFQFSGQARYRVPREILFWLTVVSVFLLIGATIAIIVISPKCLDWWQAGPIYQIYPRSFKDSDKDGNGD
LKGIQEKLDYITALNIKTLWITSFYKSSLKDFRYAVEDFKEIDPIFGTMKDFENLVAAIHDKGLKLIIDF
IPNHTSDKHPWFQSSRTRSGKYTDYYIWHNCTHVNGVTTPPNNWLSVYGNSSWHFDEVRKQCYFHQFLKE
QPDLNFRNPAVQEEIKEIITFWLSKGVDGFSFDAVKFLLEAKDLRNEIQVNTSQIPDTVTHYSELYHDFT
TTQVGMHDIVRDFRQTMNQYSREPGRYRFMGAEASAESIERTMMYYGLPFIQEADFPFNKYFTTIGTLSG
HTVYEVITSWMENMPEGKWPNWMTGGPETPRLTSRVGSEYVNAMHMLLFTLPGTPITYYGEEIGMGDISV
TNFNESYDSTTLVSKSPMQWDNSSNAGFTEANHTWLPTNSDYHTVNVDVQKTQPSSALRLYQDLSLLHAT
ELVLSRGWFCLLRDDSHSVVYTRELDGIDNVFLVVLNFGESSTVLNLQGIISDLPPELRIRLSTNSASKG
SAVDTRAISLEKGEGLVLEHSTKAPLHQQAAFRDRCFVSSRACYSSALDILYSSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH