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Report for CCDS37829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37829.1 Public Mus musculus 18 Chsy3 23 108 98 CCDS HistoryNCBI Gene:78923Re-query CCDS DB by CCDS ID:37829.1Re-query CCDS DB by GeneID:78923See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37829.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080721.5 ENSMUSP00000079546.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080721.5Link to Ensembl Protein Viewer:ENSMUSP00000079546.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080721Re-query CCDS DB by Protein ID:ENSMUSP00000079546
Original member Current member EBI ENSMUST00000238155.1 ENSMUSP00000158180.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238155.1Link to Ensembl Protein Viewer:ENSMUSP00000158180.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238155Re-query CCDS DB by Protein ID:ENSMUSP00000158180
Original member Current member NCBI NM_001081328.1 NP_001074797.1 Accepted alive Link to Nucleotide Sequence:NM_001081328.1Link to Protein Sequence:NP_001074797.1Re-query CCDS DB by Nucleotide ID:NM_001081328Re-query CCDS DB by Protein ID:NP_001074797Link to BLAST:NP_001074797.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074797.1 884 Q5DTK1 884 100% 0 0

Chromosomal Locations for CCDS 37829.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 59175677 59176484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59179265 59179548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59408884 59410446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2655 nt):
ATGGCCGTGCGCTCCCGCCGCCCATGGGTGAGCGTGGCATTGGGGTTGGTCCTGGGCTTCACCGCCGCGT
CCTGGCTCATCGCCCCCCGGGTGGCCGAGCTGAGCGAGAAGAGGCGACGCGGCTCCAGTCTTTGCTCCTA
CTACGGCCGCTCGGCTACCGGGCCCCGCGCGGACGCGCAGCAGCTGCTCCCCCAACCCCAGTCCCGGCCG
CGGCTAGAGCAGTCGCCGCCCCCTGCCAGCCACGAGCTCCCCGGTCCTCAGCAGCCGGAGGCGGCGCCCG
GAGGTCCCAGTTTTCGGAGCAGCCCCTGGCAGCAGCCGGCTCTGTTGCCGCAGAGGAGGCGAGGACACAC
GCCCGAAGGTGCGACGGCGCTTCCCGGCGCTCCGGCTGCCAAAGGGGAACCAGAGGAGGAGGATGGGGGC
GCGGCTGACCCTCGGAAGGGTGGCCGGCCGGGGAGCAGCCACAACGGCAGCGGGGACGGGGGTGCCGCTG
TCCCGACCTCCGGACCCGGGGACTTCCTGTACGTGGGTGTGATGACCGCACAGAAGTACCTGGGCAGTCG
CGCGCTGGCCGCGCAGCGGACCTGGGCGCGCTTCATCCCTGGCCGCGTGGAGTTCTTTTCCAGTCAGCAA
TCTCCCAGTGCTGCGCTTGGCCAGCCCCCGCCACCTTTGCCTGTCATCGCGCTGCCAGGGGTCGACGATT
CCTACCCTCCCCAGAAAAAGTCCTTCATGATGATCAAGTACATGCACGACCACTATCTGGACAAGTATGA
GTGGTTCATGCGCGCCGACGACGATGTCTACATCAAAGGTGATAAGTTAGAAGAATTTCTAAGATCCCTA
AATAGCAGCAAGCCTCTCTACCTGGGACAGACGGGCCTGGGCAATACTGAAGAACTTGGAAAGCTGGGGC
TGGAGCCCGGGGAGAACTTCTGCATGGGAGGACCTGGCATGATCTTCAGCAGAGAGGTTCTCAGGCGGAT
GGTGCCTCATATCGGCGAATGCCTCCGAGAGATGTACACCACACACGAAGACGTAGAAGTAGGAAGGTGT
GTTCGCCGTTTCGGCGGGACGCAGTGTGTCTGGTCTTATGAGATGCAGCAGCTGTTCCATGAAAACTACG
AACACAATCGCAAGGGTTACATCCAAGACCTCCACAACAGCAAAATCCACGCAGCCATCACGCTCCATCC
GAACAAAAGGCCCGCGTACCAGTACAGACTTCATAACTACATGCTCAGCCGCAAGATCTCCGAGCTCCGC
TACCGCACCATCCAGCTCCACCGGGAGAGCGCTCTCATGAGCAAGCTCAGCAACAGTGAAGTGAGCAAAG
AGGACCAACAGCTGGGAAGGACGCCGTCCTTCAACCACTTCCAGCCTCGGGAGAGAAATGAAGTCATGGA
GTGGGAGTTCCTGACGGGGAAGCTGCTTTACTCAGCTGCAGAGAACCAGCCTCCTCGACAGAGCATCAAC
AGCATCCTAAGGTCAGCTCTGGATGACACTGTCCTGCAGGTGATGGAGATGATCAACGAGAATGCCAAGA
GTAGGGGCCGACTCATCGACTTCAAGGAAATTCAGTATGGCTACCGCAGGGTTGATCCCATGCACGGGGT
TGAGTACATATTGGACCTGCTACTCCTGTACAAAAGGCACAAAGGAAGGAAACTGACTGTGCCTGTGAGG
CGCCATGCCTATCTTCAGCAGCCATTTAGCAAGCCTTTCTTCAGAGAGGTGGAAGAACTCGACGTCAACC
GTCTGGTGGAGAGTATCAACAGCGGTACACAGTCATTCTCCGTTATATCCAATTCTCTAAAAATTCTCTC
TTCTCTTCAAGAGGCCAAAGACATAGGAGGGCACAATGAAAAGAAAGTACACATTCTCGTTCCACTCGTT
GGAAGGTACGACATTTTCTTGAGATTCATGGAAAATTTTGAAAGTACGTGTCTTATCCCAAAGCAAAATG
TCAAGCTTGTCATCATCCTTTTCAGCAGGGATGCTGGCCAAGAGTCCATCAAGCACATTGAGCTGATACA
AGAATATCAGAGCAGGTATCCCAGTGCAGAAATGATGCTCATTCCCATGAAGGGAGAGTTTTCCAGAGGT
CTTGGTCTTGAAATGGCTTCTTCCCAGTTTGACAATGACACATTGCTGCTATTTTGTGATGTTGACTTGA
TTTTCAGAGGAGACTTCCTCCAACGCTGTCGAGACAATACAGTTCAGGGACAACAGGTATATTACCCCAT
CATCTTTAGCCAGTATGACCCAAAGGTCACCCATATGAGAAATCCTCCCACAGAGGGTGACTTTGTATTC
TCAAAGGAAACTGGGTTTTGGAGAGACTATGGCTACGGAATCACATGCATTTACAAAAGCGATCTACTGG
GTGCAGGTGGATTTGATACCTCAATACAAGGCTGGGGACTGGAAGATGTAGATCTCTATAATAAAGTCAT
CCTATCTGGCTTACGGCCCTTCAGAAGTCAAGAAGTGGGAGTGGTGCATATTTTCCATCCTGTTCATTGT
GATCCTAACTTGGACCCTAAGCAGTATAAGATGTGCTTAGGATCCAAAGCAAGTACTTTTGCCTCAACCA
TGCAACTGGCTGAACTCTGGTTAGAAAAACATTTGGGTGTCAGGGATAATCGAACTCTCTCCTGA

Translation (884 aa):
MAVRSRRPWVSVALGLVLGFTAASWLIAPRVAELSEKRRRGSSLCSYYGRSATGPRADAQQLLPQPQSRP
RLEQSPPPASHELPGPQQPEAAPGGPSFRSSPWQQPALLPQRRRGHTPEGATALPGAPAAKGEPEEEDGG
AADPRKGGRPGSSHNGSGDGGAAVPTSGPGDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQ
SPSAALGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSL
NSSKPLYLGQTGLGNTEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRC
VRRFGGTQCVWSYEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYMLSRKISELR
YRTIQLHRESALMSKLSNSEVSKEDQQLGRTPSFNHFQPRERNEVMEWEFLTGKLLYSAAENQPPRQSIN
SILRSALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRVDPMHGVEYILDLLLLYKRHKGRKLTVPVR
RHAYLQQPFSKPFFREVEELDVNRLVESINSGTQSFSVISNSLKILSSLQEAKDIGGHNEKKVHILVPLV
GRYDIFLRFMENFESTCLIPKQNVKLVIILFSRDAGQESIKHIELIQEYQSRYPSAEMMLIPMKGEFSRG
LGLEMASSQFDNDTLLLFCDVDLIFRGDFLQRCRDNTVQGQQVYYPIIFSQYDPKVTHMRNPPTEGDFVF
SKETGFWRDYGYGITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHC
DPNLDPKQYKMCLGSKASTFASTMQLAELWLEKHLGVRDNRTLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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