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Report for CCDS37940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37940.1 Public Mus musculus 19 Pip5k1b 23 108 98 CCDS HistoryNCBI Gene:18719Re-query CCDS DB by CCDS ID:37940.1Re-query CCDS DB by GeneID:18719See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025800.14 ENSMUSP00000025800.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025800.14Link to Ensembl Protein Viewer:ENSMUSP00000025800.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025800Re-query CCDS DB by Protein ID:ENSMUSP00000025800
Original member Current member NCBI NM_008846.3 NP_032872.1 Accepted alive Link to Nucleotide Sequence:NM_008846.3Link to Protein Sequence:NP_032872.1Re-query CCDS DB by Nucleotide ID:NM_008846Re-query CCDS DB by Protein ID:NP_032872Link to BLAST:NP_032872.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032872.1 539 P70181-1 539 100% 0 0

Chromosomal Locations for CCDS 37940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 24295552 24295554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24304032 24304146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24346237 24346381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24350134 24350289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24355118 24355202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24358030 24358078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24358211 24358294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24359940 24360151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24378802 24379101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24381688 24381840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24390344 24390461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24397016 24397146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24439053 24439121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGTCGTCAACTGCTGAAAATGGAGACGCCGTACCTGGAAAACAAAACGAAGAAAAAACCTACAAAAAGA
CGGCATCGTCAGCTATTAAAGGTGCTATCCAGCTGGGAATAGGATACACAGTGGGCAACCTCACGTCCAA
GCCAGAACGCGATGTCCTCATGCAAGACTTCTACGTGGTGGAAAGTGTGTTCCTCCCCAGTGAAGGGAGC
AACCTGACCCCAGCACATCACTACCCAGACTTCAGGTTTAAGACCTACGCACCGCTGGCCTTCCGGTACT
TCCGAGAACTCTTTGGTATCAAGCCCGATGATTACTTGTACTCCATCTGCAGTGAACCTCTGATAGAACT
GTCCAATCCTGGAGCCAGTGGGTCCTTGTTTTTCTTGACCAGCGATGATGAATTTATCATCAAAACCGTT
CAGCATAAGGAAGCCGAGTTCCTGCAGAAGCTGCTGCCGGGCTATTACATGAATTTAAACCAGAATCCAA
GGACTCTTCTGCCAAAATTCTATGGGCTGTATTGCATGCAGTCAGGAGGCATCAACATCCGCATTGTGGT
GATGAACAATGTCCTGCCGCGTGCCATGAGGATGCATTTGACCTATGACCTGAAAGGCTCCACATACAAG
CGAAGAGCATCCCGAAAAGAGAGGGAGAAACCCAACCCCACGTTTAAGGACCTGGACTTCCTGCAGGACA
TGCACGAGGGGCTGTATTTCGATACAGAAACATACAATGCCCTTATGAAGACACTACAGAGAGACTGCCG
GGTTCTGGAAAGCTTCAAGATCATGGACTACAGCCTTTTGCTGGGTATCCACATCTTGGACCATTCCCTC
AAAGACAAAGAAGAGGAGCCCCTCCAAAACGTGCCTGATGCAAAGCGGCCGGGGATGCAGAAAGTCCTCT
ATTCCACAGCCATGGAATCCATCCAGGGTCCAGGCAAGTCTGCAGATGGGATCATTGCAGAGAATCCAGA
CACAATGGGAGGCATTCCAGCTAAAAGCCATAAGGGAGAGAAGCTGCTTCTATTCATGGGCATTATTGAC
ATCCTCCAATCATATAGGTTAATGAAGAAGTTAGAACATTCCTGGAAAGCCCTTGTTTATGATGGGGACA
CCGTTTCAGTTCATAGACCAAGTTTTTATGCAGATAGATTTTTAAAGTTTATGAATTCCAGAGTTTTCAA
GAAAATTCAAGCTCTGAAAGCCTCGCCTTCTAAGAAACGCTGCAACTCCATCGCTGCACTGAAGGCAACC
TCCCAGGAGATCGTATCCTCCATCAGCCAGGAATGGAAGGACGAGAAGCGGGATTTGTTAACCGAAGGAC
AGAGTTTCAGCAGCCTGGATGAAGAAGCCCTGGGATCCCGACACAGGCCCGACCTGGTACCCAGCACTCC
ATCATTATTTGAAGCTGCTTCCTTAGCGACCACAATATCATCTTCTTCCTTATATGTCGGCGAACACTAT
CCACATGACAGGACTACCCTTTACTCAAACAGCAAAGGGTTACCTTCCAGTTCAACCTTCACCTTGGAAG
AGGGGACCATCTACCTGACGGCTGAGCCAAACACCCTGGACCTGCAGGATGATGCCTCTGTGCTGGACGT
CTATTTATAA

Translation (539 aa):
MSSTAENGDAVPGKQNEEKTYKKTASSAIKGAIQLGIGYTVGNLTSKPERDVLMQDFYVVESVFLPSEGS
NLTPAHHYPDFRFKTYAPLAFRYFRELFGIKPDDYLYSICSEPLIELSNPGASGSLFFLTSDDEFIIKTV
QHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCMQSGGINIRIVVMNNVLPRAMRMHLTYDLKGSTYK
RRASRKEREKPNPTFKDLDFLQDMHEGLYFDTETYNALMKTLQRDCRVLESFKIMDYSLLLGIHILDHSL
KDKEEEPLQNVPDAKRPGMQKVLYSTAMESIQGPGKSADGIIAENPDTMGGIPAKSHKGEKLLLFMGIID
ILQSYRLMKKLEHSWKALVYDGDTVSVHRPSFYADRFLKFMNSRVFKKIQALKASPSKKRCNSIAALKAT
SQEIVSSISQEWKDEKRDLLTEGQSFSSLDEEALGSRHRPDLVPSTPSLFEAASLATTISSSSLYVGEHY
PHDRTTLYSNSKGLPSSSTFTLEEGTIYLTAEPNTLDLQDDASVLDVYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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