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Report for CCDS37966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37966.1 Public Mus musculus 19 Pank1 23 108 98 CCDS HistoryNCBI Gene:75735Re-query CCDS DB by CCDS ID:37966.1Re-query CCDS DB by GeneID:75735See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112460.2 ENSMUSP00000108079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112460.2Link to Ensembl Protein Viewer:ENSMUSP00000108079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112460Re-query CCDS DB by Protein ID:ENSMUSP00000108079
Original member Current member NCBI NM_023792.2 NP_076281.1 Accepted alive Link to Nucleotide Sequence:NM_023792.2Link to Protein Sequence:NP_076281.1Re-query CCDS DB by Nucleotide ID:NM_023792Re-query CCDS DB by Protein ID:NP_076281Link to BLAST:NP_076281.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076281.1 373 Q8K4K6-2 373 100% 0 0

Chromosomal Locations for CCDS 37966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34812328 34812387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34813692 34813817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34821100 34821223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34821713 34821889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34827120 34827373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34840757 34841109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34877686 34877713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGAAGCTTGTAAATGGCAGAAAGCAAACATTCCCGTGGTTTGGTATGGATATCGGTGGAACCCTGGTTA
AGCTGGTTTACTTTGAACCGAAGGATATCACGGCAGAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAG
CATCCGGAAGTATTTAACTTCTAACACTGCCTACGGCAAAACTGGGATCCGGGACGTCCATCTGGAACTG
AAAAACCTGACCATGTGTGGGCGCAAAGGGAACCTGCACTTCATCCGCTTCCCGACCTGTGCCATGCACT
TGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCCAGCCTCCACACCACCCTCTGTGCCACGGGAGGTGG
GGCTTTCAAGTTTGAGGAGGACTTCCGAATGATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGAC
TGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCG
AAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCT
GGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGG
ACCAGTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAG
CTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGA
CTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGCTTTGGCAACATGATGAGCAAAGAAAAG
AGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCA
TTGCTCGGATGTGTGCACTGAATGAGAATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAA
TATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTT
TTGGAACATGAGGGTTATTTTGGAGCTGTTGGGGCCCTGTTGGAACTGTTCAAAATGACCGATACACAGT
AG

Translation (373 aa):
MKLVNGRKQTFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLEL
KNLTMCGRKGNLHFIRFPTCAMHLFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHKLDELD
CLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTG
TSLGGGTFLGLCCLLTGCETFEEALDMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEK
RESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALF
LEHEGYFGAVGALLELFKMTDTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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