NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38088.1 Public Mus musculus 2 Dbh 23 108 98 CCDS HistoryNCBI Gene:13166Re-query CCDS DB by CCDS ID:38088.1Re-query CCDS DB by GeneID:13166See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38088.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000910.6 ENSMUSP00000000910.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000910.6Link to Ensembl Protein Viewer:ENSMUSP00000000910.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000910Re-query CCDS DB by Protein ID:ENSMUSP00000000910
Original member Current member NCBI NM_138942.3 NP_620392.2 Accepted alive Link to Nucleotide Sequence:NM_138942.3Link to Protein Sequence:NP_620392.2Re-query CCDS DB by Nucleotide ID:NM_138942Re-query CCDS DB by Protein ID:NP_620392Link to BLAST:NP_620392.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620392.2 622 Q64237 622 100% 0 0

Chromosomal Locations for CCDS 38088.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27165516 27165866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27168173 27168319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27170312 27170569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27171312 27171488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27172704 27172806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27174815 27174981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27177308 27177451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27177714 27177752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27178188 27178247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27180977 27181104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27181471 27181630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27182666 27182800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGCAAGCTCATCTCAGCCACCAGCCTTGTTGGAGCAGCCTCCCAAGCCCCAGTGTCCGTGAGGCGGCTT
CCATGTACGGCACTGCTGTGGCCATCTTCCTGGTCATCCTGGTGGCTGCACTGCGGGGCTCGGAGCCTCC
AGAGAGCCCCTTCCCCTACCACATCCCCCTGGACCCCGAAGGGATTTTAGAGCTCTCATGGAACGTCAGC
TATGTCCAGGAGATCATCCACTTCCAGCTCCAGGTGCAAGGGCTGAGGGCTGGGGTCCTGTTTGGAATGT
CAGATCGAGGAGAGATGGAGAACGCAGATCTCATCATGCTCTGGACTGATGGGGACAGGGCCTACTTTGC
GGATGCCTGGAGTGACCGGAAAGGGCAGATCCATCTGGATTCCCAGCAAGACTACCAGCTGCTCCAGGCA
CAGAGGACTCGAGATGGCCTGTCCCTGCTCTTCAAGAGGCCCTTTGTCACCTGTGACCCCAAGGATTATG
TCATTGAGGATGACACTGTCCATCTAGTGTATGGGATCTTGGAAGAGCCATTTCAGTCGCTGGAGGCCAT
CAACACCTCAGGCCTGCATACAGGGCTGCAGCGGGTGCAGCTTCTGAAGTCTGAGGTCCCCACTCCATCC
ATGCCTGAGGATGTACAAACCATGGATATCCGGGCTCCTGACATCCTCATCCCCGACAATGAGACCACGT
ACTGGTGCTATATCACTGAGCTACCCCCACGCTTCCCCCGACACCACATCATCATGTATGAGGCCATTGT
CACTGAGGGCAATGAGGCCCTGGTGCACCACATGGAGGTCTTCCAATGTGCAGCTGAGTCTGAGGACTTC
CCCCAGTTCAACGGACCCTGTGACTCCAAAATGAAGCCTGACCGACTCAACTACTGCCGGCACGTGCTGG
CAGCATGGGCCCTGGGTGCCAAGGCATTTTACTACCCAAAAGAAGCTGGTGTTCCCTTTGGGGGCCCGGG
GTCCTCCCCGTTTCTCCGACTGGAAGTTCATTACCACAACCCACGGAAGATACAAGGCCGGCAGGACTCC
TCTGGCATCCGCCTACACTACACAGCTACTCTCCGACGCTATGATGCGGGCATCATGGAGCTCGGACTGG
TGTATACACCCTTGATGGCCATCCCCCCTCAGGAGACTGCCTTTGTGTTGACCGGCTACTGCACAGACAA
GTGCACCCAGATGGCACTGCAGGACTCCGGAATCCACATCTTTGCCTCTCAGCTTCATACACACCTGACG
GGCAGGAAGGTGGTTACTGTGCTCGCCAGGGATGGCCAAGAGAGGAAGGTGGTGAACAGGGACAACCACT
ACAGCCCCCACTTCCAGGAGATCAGAATGCTGAAGAAGGTTGTGACAGTCTACCCGGGGGACGTACTCAT
CACTTCATGCACATACAACACAGAAAACAAGACGCTGGCCACAGTGGGGGGGTTTGGAATCTTGGAGGAG
ATGTGTGTCAACTATGTGCACTACTACCCCCAGACAGAGCTGGAACTCTGCAAGAGTGCCGTGGACGACG
GCTTCCTACAGAAATACTTCCACATGGTAAACAGGTTCAGCAGTGAGGAGGTCTGCACCTGCCCTCAGGC
CTCAGTCCCCCAGCAGTTCTCCTCCGTGCCCTGGAACTCTTTCAATCGGGATATGCTCAAGGCTCTGTAT
GACTACGCCCCTATCTCCATGCATTGCAACAAGACTTCTGCTGTCCGCTTCCCGGGTGAGTGGAATCTGC
AGCCTTTGCCTAAGATCACCTCCACGCTGGAAGAACCCACCCCACGCTGCCCCATCCGACAGACTCAGAG
CCCCGCTAACCCCACTGTGCCCATCACAACAGAGGCAGATGCTGAATAG

Translation (622 aa):
MQAHLSHQPCWSSLPSPSVREAASMYGTAVAIFLVILVAALRGSEPPESPFPYHIPLDPEGILELSWNVS
YVQEIIHFQLQVQGLRAGVLFGMSDRGEMENADLIMLWTDGDRAYFADAWSDRKGQIHLDSQQDYQLLQA
QRTRDGLSLLFKRPFVTCDPKDYVIEDDTVHLVYGILEEPFQSLEAINTSGLHTGLQRVQLLKSEVPTPS
MPEDVQTMDIRAPDILIPDNETTYWCYITELPPRFPRHHIIMYEAIVTEGNEALVHHMEVFQCAAESEDF
PQFNGPCDSKMKPDRLNYCRHVLAAWALGAKAFYYPKEAGVPFGGPGSSPFLRLEVHYHNPRKIQGRQDS
SGIRLHYTATLRRYDAGIMELGLVYTPLMAIPPQETAFVLTGYCTDKCTQMALQDSGIHIFASQLHTHLT
GRKVVTVLARDGQERKVVNRDNHYSPHFQEIRMLKKVVTVYPGDVLITSCTYNTENKTLATVGGFGILEE
MCVNYVHYYPQTELELCKSAVDDGFLQKYFHMVNRFSSEEVCTCPQASVPQQFSSVPWNSFNRDMLKALY
DYAPISMHCNKTSAVRFPGEWNLQPLPKITSTLEEPTPRCPIRQTQSPANPTVPITTEADAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH