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Report for CCDS38188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38188.1 Public Mus musculus 2 Slc1a2 23 108 98 CCDS HistoryNCBI Gene:20511Re-query CCDS DB by CCDS ID:38188.1Re-query CCDS DB by GeneID:20511See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080210.9 ENSMUSP00000079100.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080210.9Link to Ensembl Protein Viewer:ENSMUSP00000079100.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000080210Re-query CCDS DB by Protein ID:ENSMUSP00000079100
Original member Current member NCBI NM_001077514.4 NP_001070982.1 Accepted alive Link to Nucleotide Sequence:NM_001077514.4Link to Protein Sequence:NP_001070982.1Re-query CCDS DB by Nucleotide ID:NM_001077514Re-query CCDS DB by Protein ID:NP_001070982Link to BLAST:NP_001070982.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070982.1 572 P43006-1 572 100% 0 0

Chromosomal Locations for CCDS 38188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 102659285 102659301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102735944 102736083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102737777 102737929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102739689 102739939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102743808 102743973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102748469 102748595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102755907 102756140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102761015 102761209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102766933 102767067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102777427 102777655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102781463 102781534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGGCATCAACAGAGGGTGCCAACAATATGCCCAAGCAGGTAGAAGTGCGCATGCATGACAGCCACCTCA
GCTCCGATGAGCCAAAGCACCGAAACCTGGGCATGCGCATGTGCGACAAGCTGGGGAAAAATCTCCTGCT
CTCACTGACTGTGTTTGGTGTCATCCTGGGAGCAGTGTGTGGCGGGCTGCTTCGCTTGGCATCGCCCATC
CACCCTGATGTGGTCATGTTGATAGCCTTCCCGGGGGACATACTCATGAGGATGCTGAAGATGCTCATCC
TCCCTCTTATCATCTCCAGTTTAATCACAGGGTTGTCAGGCCTGGATGCTAAAGCCAGCGGCCGCCTAGG
CACGAGAGCTATGGTGTATTACATGTCCACGACCATCATTGCCGCCGTGCTGGGGGTCATCCTGGTGTTG
GCCATCCACCCAGGCAATCCCAAACTCAAGAAGCAGCTAGGGCCCGGGAAGAAGAACGACGAGGTGTCTA
GCCTGGATGCCTTCCTGGATCTCATTAGAAATCTCTTCCCGGAGAACCTGGTGCAAGCCTGTTTCCAGCA
GATTCAGACAGTGACAAAGAAAGTTCTGGTGGCACCTCCATCTGAGGAGGCCAATACCACCAAGGCGGTC
ATCTCCATGTTGAATGAAACCATGAACGAGGCCCCTGAAGAAACTAAGATCGTTATCAAGAAGGGCCTGG
AGTTCAAGGACGGGATGAACGTCTTAGGTCTGATCGGATTCTTTATTGCTTTCGGCATTGCCATGGGGAA
GATGGGTGAACAGGCCAAGCTGATGGTGGAGTTCTTCAACATTCTGAATGAGATCGTGATGAAGTTAGTG
ATCATGATCATGTGGTACTCCCCTCTGGGTATCGCCTGCTTGATTTGTGGGAAGATCATCGCCATCAAGG
ACTTAGAAGTGGTTGCTAGGCAGCTGGGGATGTACATGATCACCGTGATCGTGGGCCTCATCATTCACGG
GGGCATCTTTCTCCCCTTGATTTACTTTGTAGTGACCAGAAAAAATCCATTCTCCTTTTTTGCTGGCATA
TTCCAAGCCTGGATCACTGCTCTGGGAACTGCTTCCAGTGCTGGAACTTTGCCTGTTACCTTCCGTTGCT
TGGAAGATAATCTAGGGATTGACAAGCGTGTGACCAGATTCGTCCTCCCAGTCGGAGCAACCATTAACAT
GGATGGCACAGCCCTTTACGAGGCTGTGGCAGCCATCTTCATAGCCCAAATGAATGGGGTCATCTTGGAT
GGAGGTCAGATTGTGACTGTAAGCCTTACAGCCACCCTGGCGAGCATTGGTGCAGCCAGTATTCCCAGCG
CCGGGCTGGTCACCATGCTCCTCATTCTCACAGCTGTGGGCCTGCCAACGGAGGATATCAGTCTGCTGGT
GGCGGTGGACTGGCTGCTGGATAGAATGAGAACTTCAGTCAATGTGGTGGGCGATTCTTTTGGGGCTGGG
ATTGTCTATCACCTTTCCAAGTCTGAGCTGGACACCATTGACTCCCAACACCGAATGCAGGAAGACATCG
AAATGACCAAGACGCAGTCCATTTACGACGACAAGAACCACAGGGAAAGCAACTCTAATCAGTGTGTCTA
TGCCGCACACAACTCTGTCGTAATAGATGAGTGCAAGGTAACTCTGGCGGCCAATGGAAAGTCAGCTGAC
TGCAGTGTTGAGGAAGAACCTTGGAAACGTGAAAAATAA

Translation (572 aa):
MASTEGANNMPKQVEVRMHDSHLSSDEPKHRNLGMRMCDKLGKNLLLSLTVFGVILGAVCGGLLRLASPI
HPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVL
AIHPGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPSEEANTTKAV
ISMLNETMNEAPEETKIVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGEQAKLMVEFFNILNEIVMKLV
IMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMITVIVGLIIHGGIFLPLIYFVVTRKNPFSFFAGI
FQAWITALGTASSAGTLPVTFRCLEDNLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVILD
GGQIVTVSLTATLASIGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAG
IVYHLSKSELDTIDSQHRMQEDIEMTKTQSIYDDKNHRESNSNQCVYAAHNSVVIDECKVTLAANGKSAD
CSVEEEPWKREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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