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Report for CCDS38222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38222.1 Public Mus musculus 2 Duox1 23 108 98 CCDS HistoryNCBI Gene:99439Re-query CCDS DB by CCDS ID:38222.1Re-query CCDS DB by GeneID:99439See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099461.3 ENSMUSP00000097060.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099461.3Link to Ensembl Protein Viewer:ENSMUSP00000097060.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099461Re-query CCDS DB by Protein ID:ENSMUSP00000097060
Original member Current member NCBI NM_001099297.1 NP_001092767.1 Accepted alive Link to Nucleotide Sequence:NM_001099297.1Link to Protein Sequence:NP_001092767.1Re-query CCDS DB by Nucleotide ID:NM_001099297Re-query CCDS DB by Protein ID:NP_001092767Link to BLAST:NP_001092767.1

Chromosomal Locations for CCDS 38222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122315703 122315760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122317919 122318002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122318388 122318552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122319437 122319624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122319787 122319988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122320143 122320309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122320710 122320770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122320862 122320958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122323220 122323310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122324029 122324131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122324352 122324524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122325983 122326158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122326419 122326537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122327079 122327216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122327860 122327973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122328690 122328889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122329542 122329727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122333011 122333236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122333402 122333495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122333703 122333878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122335836 122335905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122336290 122336415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122337252 122337430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122337589 122337819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122338317 122338416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122338625 122338674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122340075 122340202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122344065 122344218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122344579 122344811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122345042 122345200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122346248 122346403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122346498 122346626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122347270 122347392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4656 nt):
ATGGGGTTCCACTTAGCTCTGGCCTGGATTCTCCTGGTTGGGACACTGGCTTCTTTGGGAGCTCAGAACT
CCATTTCTTGGGAGGTACAGCGATTTGATGGATGGTATAACAACCTCATGGAGCACAGATGGGGCAGCAA
AGGCTCTCGGCTGCAGCGCCTTGTTCCAGCCAGCTATGCAGATGGTGTCTACCAGCCCCTGAAAGAACCC
TACCTGCCTAACCCCCGACACCTTAGTAACAGGGTCATGAGAGGTTCTGCAGGGCAGCCATCTCTTCGGA
ACCGTACAGTCCTGGGTGTCTTCTTTGGCTACCACGTGCTCTCAGACCTGGTGAGTGTGGAAACACCAGG
CTGCCCCGCAGAGTTCCTCAACATTTACATCCCGCATGGGGACCCGGTGTTCGACCCTGACAAGCGCGGG
AACGTGGTGCTGCCCTTTCAAAGGAGCCGCTGGGACCGCAACACTGGACAGAGCCCCAGCAACCCCCGGG
ACCAGAGCAACCAGGTGACCGGCTGGCTAGATGGCAGCGCCATCTATGGCTCCTCTCATTCCTGGAGTGA
CACTCTGAGGAGCTTCTCTGGAGGACAGCTGGCTTCTGGGCCTGACCCTGCTTTCCCATCGGACTCCCAG
AGCTCTCTGCTCATGTGGATGGCGCCGGACCCCTCCACAGGGCAGGGAGGGCCACGGGGGGTGTATGCCT
TCGGGGCCCAGCGCGGGAACAGGGAGCCCTTTCTGCAGGCTCTGGGCTTGTTGTGGTTTCGCTACCACAA
CCTGTGTGCCAGGAAGCTGGCGCAGGAGCACCCGCACTGGGGGGATGAGGAACTGTTCCAGCATGCTCGC
AAGAGGGTCATTGCCACCTACCAGAACATTGCGATGTATGAGTGGCTGCCCAGCTTCCTGAAGCAAACTC
CTCCGGAGTATCCAGGATACCGTCCATTTCTGGACCCCAGTATCTCCCCAGAGTTCGTTGTGGCCTCTGA
GCAGTTCCTCTCTACCATGGTGCCCTCTGGGGTCTACATGAGGAATGCCAGTTGTCATTTCCAGGGGATT
CCCAGTCATAACTCAAGTGTCTCTGGAGCTCTCCGGGTCTGCAACAGCTACTGGAGTCGAGAGCACCCCA
AGCTACAAAGGGCTGAAGATGTGGATGCACTGCTGCTGGGCATGGCCTCCCAGATTGCTGAGAGAGAGGA
CCACGTGGTGGTTGAGGACATGCAAGATTTCTGGCCTGGGCCACTGAAGTTTTCCCGTACAGACTACCTG
GCCAGCTGCCTGCAGAGGGGCCGGGATCTAGGCCTGCCTTCTTACACCAAAGCCAGGGAGGCACTGGGCC
TGTCTCCCATTTCCCACTGGCAGGACATCAACCCTGCACTCTCCAGGAGCAATGGCACTGTGCTGGAGGC
CACAGCTGCCCTGTACAATCAGGACCTGTCTCGGCTGGAGCTACTCCCAGGGGGGCTTCTGGAGAGCCAT
GGAGACCCTGGACCCCTTTTCAGCACTATTGTCCTTGACCAGTTTGTCAGGCTACGAGATGGTGACCGTT
ACTGGTTTGAAAACACCAGGAACGGATTGTTCTCTAAGGAAGAGATCGCAGAGATCCGAAACACTTCCCT
ACGGGACATTCTAGTGGCTGTCACCAATGTGGACCCCAGTGCCCTACAGCCCAATGTCTTCTTTTGGCTT
GCAGGAGACCCCTGTCCACAGCCAAGTCAGCTCAGCGCCAAGGGCCTGCCAGCCTGTGCCCCCCTCTTCA
TTCGGGACTATTTCGAGGGGAGTGGATTTGGCTTCGGACTCACCATTGGGACCCTTTGCTGTTTCCCCTT
AGTCAGCCTCCTTAGTGCCTGGATTGTTGCCCGGCTTCGAAAGAGGAATTTCAAGAGGCTCCAGAGACAA
GACCGCCAGAGCATCATGTCGGAGAAGCTTGTAGGGGGAGTGGAAGCTTTGGAGTGGCAGGGCCGCAATG
AACCCTGCAGGCCAGTGCTTGTGCACTTACAGCCGGGACAGATTCGAGTAGTGGATGGCAGGCTCACCGT
GCTCCGGACCATCCAGCTGCGACCCCCACAGCAGGTCAACCTCATCCTGTCCAGCAACCGTGGACGCCGC
ACCCTGCTGCTCAAGATCCCCAAGGAGTATGACCTGGTTCTGTTGTTTAACATGGAGGAGGAACGGCAGG
CACTGGTGGAAAACGTCAGGGGAGCTCTGAAGGAAAATGGGCTGAGCTTCCAGGAGTGGGAACTGAGGGA
GCAGGAGCTGATGAGGGCAGCAGTGACCAGGCAACAACGGGGCCACCTCCTGGAGACCTTCTTCAGGCAC
CTTTTCTCCCAGGTGTTAGACATCAATCAGGCTGATGCAGGGACTCTGCCTCTGGATTCCTCGACCAAAG
TGCGTGAGGCCCTGACCTGTGAGCTGAGCAGAGCTGAGTTTGCAGACTCCCTAGGCCTCAAGCCCCAGGA
CATGTTTGTGGAGTCCATGTTTTCTCTAGCCGACAAGGATGGCAATGGCTACCTGTCCTTCCGGGAGTTC
CTGGACATCCTGGTGGTCTTCATGAAAGGCTCCCCAGAGGAGAAGTCTCGTCTTATGTTCCGAATGTATG
ACTTTGATGGGAACGGTCTCATTTCCAAGGATGAGTTCATTAGGATGCTAAGGTCCTTCATCGAGATCTC
CAACAACTGCCTGTCCAAGGCCCAGCTGGCTGAGGTGGTTGAGTCTATGTTCCGGGAGTCTGGCTTCCAG
GACAAGGAGGAGCTGACCTGGGAGGACTTCCACTTCATGCTGCGGGACCACGACAGTGATCTCCGATTCA
CACAGCTCTGTGTCAAAGGTGTGGAAGTGCCGGAAGTGATCAAGAACCTCTGCCGGCGAGCCTCCTACAT
CAGCCAGGAGAAGATCTGCCCTTCGCCCAGAATGAGCGCCCACTGTGCCCGAAACAACATGAAGACTGCG
TCATCACCACAGAGACTGCAGTGCCCCATGGACACAGACCCTCCTCAAGAGATTCGACGGAGGTTTGGCA
AAAAGGTAACTTCATTCCAGCCCTTACTGTTCACTGAGGCACACCGAGAGAAGTTTCAACGCAGCCGCCG
CCACCAAACGGTGCAGCAGTTCAAGCGCTTTATTGAGAATTACAGGCGCCACATTGGCTGTGTGGCGGTG
TTTTACACCATCACTGGGGCGCTCTTCCTGGAGAGAGCCTACTACTATGCATTTGCAGCACACCACAGCG
GCATCACCGATACCACCCGTGTAGGCATCATCCTGTCCCGGGGCACGGCGGCCAGCATCTCCTTTATGTT
TTCCTACATCCTGCTCACCATGTGTCGCAACCTCATCACCTTCTTGCGGGAGACCTTCCTCAACCGCTAC
ATTCCCTTCGATGCTGCCGTGGACTTCCATCGCCTCATCGCCTCCACGGCCATCATCCTCACAGTCTTAC
ACAGTGCTGGCCACGTAGTGAATGTGTACCTGTTCTCCATCAGTCCACTCAGTGTCCTCTCTTGCCTCTT
CCCTGGCCTCTTCCACGATGATGGGTCGGAGTTCCCTCAGAAGTATTACTGGTGGTTCTTCCAGACTGTG
CCAGGTCTCACTGGGGTCCTCCTGCTCCTGGCCCTGGCCATCATGTACGTCTTCGCCTCCCACCACTTCC
GCCGCCGCAGTTTCCGGGGCTTCTGGCTGACCCATCACCTCTACATTTTTCTCTACATTCTGCTCATCAT
ACATGGCAGCTTTGCTCTGATCCAGATGCCCCGGTTCCACATCTTCTTCCTGGTCCCTGCAATTATTTAT
GTGGGGGACAAGCTGGTGAGCCTGAGCCGGAAGAAGGTGGAGATCAGCGTGGTGAAGGCTGAGCTGCTGC
CATCAGGAGTGACCCACCTGCGGTTCCAGAGGCCTCAGGGCTTTGAGTATAAGTCAGGGCAGTGGGTTCG
GATTGCGTGCCTGGCTCTGGGAACCACCGAGTATCACCCTTTCACACTGACTTCTGCACCCCACGAGGAC
ACACTCAGCCTGCACATCCGGGCGGCTGGACCCTGGACCACTCGCCTCAGGGAAATCTACTCACCCCCAA
CGGGTGACACCTGTGCCAGATACCCAAAGCTGTACCTCGATGGACCGTTTGGAGAGGGCCACCAGGAGTG
GCACAAGTTTGAGGTGTCAGTGCTGGTAGGAGGGGGCATTGGAGTCACTCCCTTTGCCTCCATCCTCAAA
GACCTGGTTTTCAAGTCATCAGTCAGCTGCCAAGTGTTCTGTAAGAAGATCTACTTCATCTGGGTGACAA
GGACTCAGAGGCAGTTTGAGTGGCTGGCTGACATCATCCGGGAGGTGGAGGAGAATGACCGCCAGGACCT
GGTGTCTGTGCACATCTATATTACTCAGCTGGCTGAGAAGTTCGACCTCAGGACCACCATGCTGTACATC
TGTGAGCGGCACTTCCAGAAGGTGCTGAACAGGAGTCTGTTCACGGGCCTGCGCTCCATCACCCACTTTG
GTCGCCCTCCCTTTGAGCCCTTTTTCAACTCTCTGCAGGAAGTCCACCCCCAAGTCCGAAAGATTGGAGT
ATTTAGCTGTGGTCCCCCTGGCATGACCAAGAATGTGGAGAAGGCTTGTCAGCTCATCAACAGGCAGGAC
AGGACTCATTTTTCTCACCATTATGAGAACTTCTAG

Translation (1551 aa):
MGFHLALAWILLVGTLASLGAQNSISWEVQRFDGWYNNLMEHRWGSKGSRLQRLVPASYADGVYQPLKEP
YLPNPRHLSNRVMRGSAGQPSLRNRTVLGVFFGYHVLSDLVSVETPGCPAEFLNIYIPHGDPVFDPDKRG
NVVLPFQRSRWDRNTGQSPSNPRDQSNQVTGWLDGSAIYGSSHSWSDTLRSFSGGQLASGPDPAFPSDSQ
SSLLMWMAPDPSTGQGGPRGVYAFGAQRGNREPFLQALGLLWFRYHNLCARKLAQEHPHWGDEELFQHAR
KRVIATYQNIAMYEWLPSFLKQTPPEYPGYRPFLDPSISPEFVVASEQFLSTMVPSGVYMRNASCHFQGI
PSHNSSVSGALRVCNSYWSREHPKLQRAEDVDALLLGMASQIAEREDHVVVEDMQDFWPGPLKFSRTDYL
ASCLQRGRDLGLPSYTKAREALGLSPISHWQDINPALSRSNGTVLEATAALYNQDLSRLELLPGGLLESH
GDPGPLFSTIVLDQFVRLRDGDRYWFENTRNGLFSKEEIAEIRNTSLRDILVAVTNVDPSALQPNVFFWL
AGDPCPQPSQLSAKGLPACAPLFIRDYFEGSGFGFGLTIGTLCCFPLVSLLSAWIVARLRKRNFKRLQRQ
DRQSIMSEKLVGGVEALEWQGRNEPCRPVLVHLQPGQIRVVDGRLTVLRTIQLRPPQQVNLILSSNRGRR
TLLLKIPKEYDLVLLFNMEEERQALVENVRGALKENGLSFQEWELREQELMRAAVTRQQRGHLLETFFRH
LFSQVLDINQADAGTLPLDSSTKVREALTCELSRAEFADSLGLKPQDMFVESMFSLADKDGNGYLSFREF
LDILVVFMKGSPEEKSRLMFRMYDFDGNGLISKDEFIRMLRSFIEISNNCLSKAQLAEVVESMFRESGFQ
DKEELTWEDFHFMLRDHDSDLRFTQLCVKGVEVPEVIKNLCRRASYISQEKICPSPRMSAHCARNNMKTA
SSPQRLQCPMDTDPPQEIRRRFGKKVTSFQPLLFTEAHREKFQRSRRHQTVQQFKRFIENYRRHIGCVAV
FYTITGALFLERAYYYAFAAHHSGITDTTRVGIILSRGTAASISFMFSYILLTMCRNLITFLRETFLNRY
IPFDAAVDFHRLIASTAIILTVLHSAGHVVNVYLFSISPLSVLSCLFPGLFHDDGSEFPQKYYWWFFQTV
PGLTGVLLLLALAIMYVFASHHFRRRSFRGFWLTHHLYIFLYILLIIHGSFALIQMPRFHIFFLVPAIIY
VGDKLVSLSRKKVEISVVKAELLPSGVTHLRFQRPQGFEYKSGQWVRIACLALGTTEYHPFTLTSAPHED
TLSLHIRAAGPWTTRLREIYSPPTGDTCARYPKLYLDGPFGEGHQEWHKFEVSVLVGGGIGVTPFASILK
DLVFKSSVSCQVFCKKIYFIWVTRTQRQFEWLADIIREVEENDRQDLVSVHIYITQLAEKFDLRTTMLYI
CERHFQKVLNRSLFTGLRSITHFGRPPFEPFFNSLQEVHPQVRKIGVFSCGPPGMTKNVEKACQLINRQD
RTHFSHHYENF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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