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Report for CCDS38247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38247.1 Public Mus musculus 2 Crls1 23 108 98 CCDS HistoryNCBI Gene:66586Re-query CCDS DB by CCDS ID:38247.1Re-query CCDS DB by GeneID:66586See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38247.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124836.7 ENSMUSP00000132682.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124836.7Link to Ensembl Protein Viewer:ENSMUSP00000132682.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124836Re-query CCDS DB by Protein ID:ENSMUSP00000132682
Original member Current member NCBI NM_025646.3 NP_079922.2 Accepted alive Link to Nucleotide Sequence:NM_025646.3Link to Protein Sequence:NP_079922.2Re-query CCDS DB by Nucleotide ID:NM_025646Re-query CCDS DB by Protein ID:NP_079922Link to BLAST:NP_079922.2

Chromosomal Locations for CCDS 38247.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132849902 132850003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132854893 132855022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132861209 132861294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132862335 132862403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132864090 132864181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132865837 132865924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTACCTGATTCTTGAAGAAGACTTTAATGTTGCACTAG
GTGTTTTTGCTTTAGCCGGGCTAACGGATTTGTTGGATGGATTTATTGCTCGAAACTGGGCCAACCAAAA
ATCAGCTTTGGGAAGTGCTCTTGATCCACTTGCTGATAAAGTTCTTATCAGCATCTTATATATTAGCTTG
ACCTATGCAGATCTTATTCCAGTCCCACTCACTTACATGATAATTTCAAGAGATGTAATGTTGATCGCTG
CTGTGTTTTATGTCAGATACCGAACTCTGCCAACACCGCGAACACTAGCTAAGTACTTCAATCCTTGCTA
TGCCACGGCTAGGTTAAAACCAACATTCATCAGCAAGGTAAATACAGCAGTCCAGTTAATTTTGGTGGCA
GCTTCTTTGGCAGCTCCAGTTTTCAATTATGCTGACAGCATTTATCTTCAGATACTATGGTGTTGCACAG
CATTCACTACAGCTGCATCAGCATACAGTTATTATCACTATGGTCGGAAAACTGTTCAGGTGATAAAGGG
CAAATGA

Translation (188 aa):
MTRIGLAPVLGYLILEEDFNVALGVFALAGLTDLLDGFIARNWANQKSALGSALDPLADKVLISILYISL
TYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVA
ASLAAPVFNYADSIYLQILWCCTAFTTAASAYSYYHYGRKTVQVIKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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