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Report for CCDS38256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38256.1 Public Mus musculus 2 Slc24a3 23 108 98 CCDS HistoryNCBI Gene:94249Re-query CCDS DB by CCDS ID:38256.1Re-query CCDS DB by GeneID:94249See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081121.3 ENSMUSP00000079897.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081121.3Link to Ensembl Protein Viewer:ENSMUSP00000079897.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000081121Re-query CCDS DB by Protein ID:ENSMUSP00000079897
Original member Current member NCBI NM_053195.3 NP_444425.1 Accepted alive Link to Nucleotide Sequence:NM_053195.3Link to Protein Sequence:NP_444425.1Re-query CCDS DB by Nucleotide ID:NM_053195Re-query CCDS DB by Protein ID:NP_444425Link to BLAST:NP_444425.1

Chromosomal Locations for CCDS 38256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 145244972 145245089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145448506 145448582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145512754 145512828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145518402 145518486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145518844 145518947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145580972 145581046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145591158 145591183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145598341 145598394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145602472 145602605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145604422 145604582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145606597 145606867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145613523 145613689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145616599 145616713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145617834 145617946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145635373 145635438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145640215 145640361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGGATCTCATTGGGGAAGATAGAAAATGGATGGTGGGGAGGAAGCTGATGCAGGTGAATGATACACTGA
CTTCTGAAGATGCAGGGCTCCAGAGCAGCAAGAACTGCACAGAACCAGCCCTGCATGAATTCCCCAGGGA
CATCTTCTCCAATGAAGACCGACGACAGGGAGCAGTGGTCCTCCACGTGCTCTGTGCCATGTACATGTTC
TATGCGCTGGCCATTGTGTGCGATGACTTCTTCGTCCCATCCTTGGAAAAGATCTGTGAGCGCCTCCACC
TCAGTGAAGATGTGGCAGGAGCCACATTCATGGCAGCAGGCAGCTCGGCCCCAGAGCTGTTCACGTCGGT
CATAGGAGTCTTCATCACAAAGGGTGATGTGGGAGTTGGCACCATCGTGGGCTCTGCCGTGTTCAACATC
CTGTGCATCATTGGCGTCTGCGGGCTCTTTGCAGGGCAGGTGGTGGCTCTTTCCTCCTGGTGCCTGCTGA
GGGACTCCATCTACTACACGCTGTCTGTGGTCGCACTCATTGTGTTCATTTACGATGAAAAAGTTTCTTG
GTGGGAATCTCTAGTCCTTGTGCTGATGTACCTCATCTATATCGTCATCATGAAATACAATGCGTGCATA
CACCAGTGCTTCGAAAGGAGGACGAAAGGTGCCGGGAACATGGTCAACGGATTGGCCAACAATGCAGAAA
TCGACGACAGCAGCAACTGCGATGCCACTGTGGTGCTACTCAAGAAAGCCAATTTCCACCGCAAAGCGTC
CGTGATCATGGTGGATGAGCTGCTGTCTGCCTACCCACACCAGCTTTCTTTCTCTGAGGCTGGCCTTCGA
ATTATGATCACAAGCCACTTTCCTCCCAAGACCCGCCTCTCCATGGCCAGTCGCATGTTAATCAATGAGA
GACAAAGACTGATAAACAGCAGGGCCTATACCAATGGGGAATCTGAAGTGGCCATCAAAATCCCAATTAA
GCACACAGTGGAGAACGGAACAGGGCCCAGCAGTGCCCCAGACAGGGGTGTGAACGGAACCCGGAGGGAC
GACATAGTTGCTGAGACTGACAATGAGACAGAGAACGAGAATGAAGACAATGAGAATAACGAGAATGATG
AAGAGGAGGAGGAGGATGAAGATGATGATGAAGGCCCCTACACGCCGTTCGACCCCCCCTCTGGCAAACT
GGAAACTGTGAAATGGGCTTTCACCTGGCCACTGAGCTTTGTCTTGTACTTCACTGTCCCCAACTGTAAC
AAACCCCACTGGGAGAAGTGGTTTATGGTGACATTCGCTTCCTCTACGCTATGGATCGCAGCCTTCTCCT
ACATGATGGTGTGGATGGTTACCATCATCGGCTACACACTAGGGATCCCTGATGTCATCATGGGGATCAC
CTTCCTGGCTGCCGGAACCAGCGTGCCAGACTGCATGGCCAGCCTCATTGTAGCCAGACAAGGGATGGGG
GATATGGCTGTGTCCAATTCCATTGGGAGCAACGTCTTTGACATCTTGATTGGGCTCGGTCTTCCCTGGG
CTCTGCAGACTCTGGCTGTAGACTACGGATCCTATATTCGGCTGAATAGCAGAGGGCTCATCTACTCCGT
GGGCTTGCTCCTGGCCTCTGTCTTTGTCACGGTCTTTGGTGTTCACTTGAACAAGTGGCAGCTGGACAAG
AAGCTGGGCTGTGGATGCCTCTTCCTGTACGGCGTGTTCCTCTGTTTCTCCATCATGACGGAGTTCAACG
TGTTCACCTTTGTGAACTTGCCCATGTGTGGGGACTAA

Translation (595 aa):
MDLIGEDRKWMVGRKLMQVNDTLTSEDAGLQSSKNCTEPALHEFPRDIFSNEDRRQGAVVLHVLCAMYMF
YALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNI
LCIIGVCGLFAGQVVALSSWCLLRDSIYYTLSVVALIVFIYDEKVSWWESLVLVLMYLIYIVIMKYNACI
HQCFERRTKGAGNMVNGLANNAEIDDSSNCDATVVLLKKANFHRKASVIMVDELLSAYPHQLSFSEAGLR
IMITSHFPPKTRLSMASRMLINERQRLINSRAYTNGESEVAIKIPIKHTVENGTGPSSAPDRGVNGTRRD
DIVAETDNETENENEDNENNENDEEEEEDEDDDEGPYTPFDPPSGKLETVKWAFTWPLSFVLYFTVPNCN
KPHWEKWFMVTFASSTLWIAAFSYMMVWMVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGMG
DMAVSNSIGSNVFDILIGLGLPWALQTLAVDYGSYIRLNSRGLIYSVGLLLASVFVTVFGVHLNKWQLDK
KLGCGCLFLYGVFLCFSIMTEFNVFTFVNLPMCGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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