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Report for CCDS38339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38339.1 Public Mus musculus 2 Slc9a8 23 108 98 CCDS HistoryNCBI Gene:77031Re-query CCDS DB by CCDS ID:38339.1Re-query CCDS DB by GeneID:77031See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047815.12 ENSMUSP00000044185.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047815.12Link to Ensembl Protein Viewer:ENSMUSP00000044185.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047815Re-query CCDS DB by Protein ID:ENSMUSP00000044185
Original member Current member NCBI NM_148929.3 NP_683731.1 Accepted alive Link to Nucleotide Sequence:NM_148929.3Link to Protein Sequence:NP_683731.1Re-query CCDS DB by Nucleotide ID:NM_148929Re-query CCDS DB by Protein ID:NP_683731Link to BLAST:NP_683731.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683731.1 576 Q8R4D1-1 576 100% 0 0

Chromosomal Locations for CCDS 38339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 167421752 167421765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167424119 167424297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167434782 167434862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167441129 167441187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167443449 167443532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167445506 167445607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167446502 167446536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167451207 167451350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167457327 167457465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167459649 167459754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167465341 167465457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167467685 167467767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167468964 167469075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167471382 167471602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167473434 167473580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167474028 167474135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGGCGGAGGAGGAGTTCTCCAACACAACCCATGAGACCTTCAACTTCACCCTTCACACCACCTTGGGTG
TCACCACGAAGCTGGTGCTGCCGACACCTGCCAAGCCTATCCTTCCGGTGCAGACGGGAGAGCAGGCCCA
GCAGGAGGAGCAGTCGAGCGGCATGACCATTTTCTTCAGCCTCCTCGTCCTAGCCATCTGCATCATCCTG
GTGCACCTGCTGATTCGGTACCGCCTGCACTTTCTGCCTGAGAGCGTGGCTGTGGTTTCTCTAGGTATTC
TCATGGGAGCAGTAATAAAAGTTATAGAGTTTAAAAAGCTGGCAAATTGGAAGGAGGAAGAAATGTTTCG
CCCCAACATGTTTTTCCTTCTCTTGCTCCCACCTATTATCTTTGAGTCAGGATACTCACTGCACAAGGGG
AACTTCTTTCAGAACATCGGTTCCATCACTCTCTTCGCTGTCTTTGGAACGGCAATCTCGGCTTTTGTAG
TAGGTGGAGGAATTTACTTTCTGGGTCAGGCTGATGTAATCTCTAAACTCAACATGACAGACAGTTTCGC
ATTTGGCTCCCTGATATCTGCAGTCGACCCAGTCGCCACTATTGCGATTTTCAACGCACTGCATGTGGAC
CCTGTGCTCAACATGCTGGTGTTTGGAGAAAGCATTCTCAACGATGCAGTCTCCATCGTCCTCACCAACA
CGGCTGAAGGTCTAACAAGAAAACATATGTCAGATGTCAGTGGGTGGCAAACGTTCTCACAGGCCCTTGG
CTACTTCCTCAAAATGTTCTTTGGCTCCGCAGCACTTGGCACGCTGACTGGCTTGATTTCAGCATTAGTG
TTGAAGCACATTGACCTGAGGAAAACGCCTTCCCTGGAGTTTGGCATGATGATCATTTTTGCTTACCTGC
CATATGGGCTGGCAGAAGGAATCTCACTCTCAGGCATCATGGCGATCCTGTTTTCTGGCATCGTGATGTC
ACACTATACACACCATAACCTCTCCCCAGTCACCCAGATCCTCATGCAGCAGACTCTCCGAACTGTGGCC
TTCCTGTGTGAAACGTGTGTGTTTGCATTTCTTGGCCTCTCCATTTTTAGTTTCCCTCACAAGTTTGAAA
TTTCCTTTGTCATCTGGTGCATAGTGCTGGTCCTGTTTGGCAGAGCCGTCAACATCTTCCCTCTGTCCTA
CCTGCTGAACTTCTTCCGAGATCACAAAATCACCCCCAAGATGATGTTCATCATGTGGTTCAGTGGTCTT
CGAGGGGCCATCCCCTATGCACTAAGCCTGCACCTGGGCCTGGAGCCCATGGAGAAGCGTCAGCTCATCG
GCACCACCACCATCGTCATCGTGCTCTTCACCATCCTGCTGCTGGGCGGCAGCACCATGCCCCTCATCCG
CCTCGTGGACATCGAGGATGCCCGGGCTCGCCGAAGGAGCAAGAAAGACGTCAACCTCAGCAAGACTGAG
AAGATGGGTAATGCCATCGAGTCAGAGCACCTGTCAGAGCTCACTGAAGAAGAGTACGAAGCTCACTACA
TCAGACAGCAGGACCTCAAAGGCTTCATGTGGCTGGATGCCAAGTACCTGAACCCCTTCTTCACACGGCG
GCTGACACAGGAGGACCTCCACCATGGCCGCATCCAGATGAAGAGCCTCACCAATAAGTGGTATGAGGAG
GTCCGTCAGGGACCGTCAGGCTCTGAGGATGATGAGCAGGAGTTGTTCTGA

Translation (576 aa):
MAEEEFSNTTHETFNFTLHTTLGVTTKLVLPTPAKPILPVQTGEQAQQEEQSSGMTIFFSLLVLAICIIL
VHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKG
NFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVD
PVLNMLVFGESILNDAVSIVLTNTAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSAALGTLTGLISALV
LKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVA
FLCETCVFAFLGLSIFSFPHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIMWFSGL
RGAIPYALSLHLGLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLVDIEDARARRRSKKDVNLSKTE
KMGNAIESEHLSELTEEEYEAHYIRQQDLKGFMWLDAKYLNPFFTRRLTQEDLHHGRIQMKSLTNKWYEE
VRQGPSGSEDDEQELF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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