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Report for CCDS3839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3839.1 Public Homo sapiens 4 ACSL1 24 110 108 CCDS HistoryNCBI Gene:2180Re-query CCDS DB by CCDS ID:3839.1Re-query CCDS DB by GeneID:2180See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281455.7 ENSP00000281455.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281455.7Link to Ensembl Protein Viewer:ENSP00000281455.2Re-query CCDS DB by Nucleotide ID:ENST00000281455Re-query CCDS DB by Protein ID:ENSP00000281455
Original member Current member EBI ENST00000515030.5 ENSP00000422607.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515030.5Link to Ensembl Protein Viewer:ENSP00000422607.1Re-query CCDS DB by Nucleotide ID:ENST00000515030Re-query CCDS DB by Protein ID:ENSP00000422607
Original member Current member EBI ENST00000504342.5 ENSP00000425006.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504342.5Link to Ensembl Protein Viewer:ENSP00000425006.1Re-query CCDS DB by Nucleotide ID:ENST00000504342Re-query CCDS DB by Protein ID:ENSP00000425006
Original member Current member EBI ENST00000706367.1 ENSP00000516352.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706367.1Link to Ensembl Protein Viewer:ENSP00000516352.1Re-query CCDS DB by Nucleotide ID:ENST00000706367Re-query CCDS DB by Protein ID:ENSP00000516352
Original member Current member EBI ENST00000706369.1 ENSP00000516354.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706369.1Link to Ensembl Protein Viewer:ENSP00000516354.1Re-query CCDS DB by Nucleotide ID:ENST00000706369Re-query CCDS DB by Protein ID:ENSP00000516354
Original member Current member NCBI NM_001286708.2 NP_001273637.1 Accepted alive Link to Nucleotide Sequence:NM_001286708.2Link to Protein Sequence:NP_001273637.1Re-query CCDS DB by Nucleotide ID:NM_001286708Re-query CCDS DB by Protein ID:NP_001273637Link to BLAST:NP_001273637.1
Original member Current member NCBI NM_001381877.1 NP_001368806.1 Accepted alive Link to Nucleotide Sequence:NM_001381877.1Link to Protein Sequence:NP_001368806.1Re-query CCDS DB by Nucleotide ID:NM_001381877Re-query CCDS DB by Protein ID:NP_001368806Link to BLAST:NP_001368806.1
Original member Current member NCBI NM_001381878.1 NP_001368807.1 Accepted alive Link to Nucleotide Sequence:NM_001381878.1Link to Protein Sequence:NP_001368807.1Re-query CCDS DB by Nucleotide ID:NM_001381878Re-query CCDS DB by Protein ID:NP_001368807Link to BLAST:NP_001368807.1
Original member Current member NCBI NM_001381879.1 NP_001368808.1 Accepted alive Link to Nucleotide Sequence:NM_001381879.1Link to Protein Sequence:NP_001368808.1Re-query CCDS DB by Nucleotide ID:NM_001381879Re-query CCDS DB by Protein ID:NP_001368808Link to BLAST:NP_001368808.1
Original member Current member NCBI NM_001381880.1 NP_001368809.1 Accepted alive Link to Nucleotide Sequence:NM_001381880.1Link to Protein Sequence:NP_001368809.1Re-query CCDS DB by Nucleotide ID:NM_001381880Re-query CCDS DB by Protein ID:NP_001368809Link to BLAST:NP_001368809.1
Original member Current member NCBI NM_001381881.1 NP_001368810.1 Accepted alive Link to Nucleotide Sequence:NM_001381881.1Link to Protein Sequence:NP_001368810.1Re-query CCDS DB by Nucleotide ID:NM_001381881Re-query CCDS DB by Protein ID:NP_001368810Link to BLAST:NP_001368810.1
Original member Current member NCBI NM_001381882.1 NP_001368811.1 Accepted alive Link to Nucleotide Sequence:NM_001381882.1Link to Protein Sequence:NP_001368811.1Re-query CCDS DB by Nucleotide ID:NM_001381882Re-query CCDS DB by Protein ID:NP_001368811Link to BLAST:NP_001368811.1
Original member Current member NCBI NM_001381883.1 NP_001368812.1 Accepted alive Link to Nucleotide Sequence:NM_001381883.1Link to Protein Sequence:NP_001368812.1Re-query CCDS DB by Nucleotide ID:NM_001381883Re-query CCDS DB by Protein ID:NP_001368812Link to BLAST:NP_001368812.1
Original member Current member NCBI NM_001995.5 NP_001986.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001995.5Link to Protein Sequence:NP_001986.2Re-query CCDS DB by Nucleotide ID:NM_001995Re-query CCDS DB by Protein ID:NP_001986Link to BLAST:NP_001986.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273637.1 698 P33121-1 698 100% 0 0
NP_001368806.1 698 P33121-1 698 100% 0 0
NP_001368807.1 698 P33121-1 698 100% 0 0
NP_001368808.1 698 P33121-1 698 100% 0 0
NP_001368809.1 698 P33121-1 698 100% 0 0
NP_001368810.1 698 P33121-1 698 100% 0 0
NP_001368811.1 698 P33121-1 698 100% 0 0
NP_001368812.1 698 P33121-1 698 100% 0 0
NP_001986.2 698 P33121-1 698 100% 0 0

Chromosomal Locations for CCDS 3839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 184757125 184757265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184757635 184757706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184757819 184757920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184760357 184760500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184762407 184762523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184763167 184763255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184764853 184764925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184765891 184765986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184766622 184766756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184768316 184768450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184770399 184770476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184773081 184773154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184773663 184773714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184773843 184773875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184776484 184776662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184776884 184776983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184780332 184780433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184783927 184783991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184788617 184788731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184803320 184803514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGCAAGCCCATGAGCTGTTCCGGTATTTTCGAATGCCAGAGCTGGTTGACTTCCGACAGTACGTGCGTA
CTCTTCCGACCAACACGCTTATGGGCTTCGGAGCTTTTGCAGCACTCACCACCTTCTGGTACGCCACGAG
ACCCAAACCCCTGAAGCCGCCATGCGACCTCTCCATGCAGTCAGTGGAAGTGGCGGGTAGTGGTGGTGCA
CGAAGATCCGCACTACTTGACAGCGACGAGCCCTTGGTGTATTTCTATGATGATGTCACAACATTATACG
AAGGTTTCCAGAGGGGAATACAGGTGTCAAATAATGGCCCTTGTTTAGGCTCTCGGAAACCAGACCAACC
CTATGAATGGCTTTCATATAAACAGGTTGCAGAATTGTCGGAGTGCATAGGCTCAGCACTGATCCAGAAG
GGCTTCAAGACTGCCCCAGATCAGTTCATTGGCATCTTTGCTCAAAATAGACCTGAGTGGGTGATTATTG
AACAAGGATGCTTTGCTTATTCGATGGTGATCGTTCCACTTTATGATACCCTTGGAAATGAAGCCATCAC
GTACATAGTCAACAAAGCTGAACTCTCTCTGGTTTTTGTTGACAAGCCAGAGAAGGCCAAACTCTTATTA
GAGGGTGTAGAAAATAAGTTAATACCAGGCCTTAAAATCATAGTTGTCATGGATGCCTACGGCAGTGAAC
TGGTGGAACGAGGCCAGAGGTGTGGGGTGGAAGTCACCAGCATGAAGGCGATGGAGGACCTGGGAAGAGC
CAACAGACGGAAGCCCAAGCCTCCAGCACCTGAAGATCTTGCAGTAATTTGTTTCACAAGTGGAACTACA
GGCAACCCCAAAGGAGCAATGGTCACTCACCGAAACATAGTGAGCGATTGTTCAGCTTTTGTGAAAGCAA
CAGAGAATACAGTCAATCCTTGCCCAGATGATACTTTGATATCTTTCTTGCCTCTCGCCCATATGTTTGA
GAGAGTTGTAGAGTGTGTAATGCTGTGTCATGGAGCTAAAATCGGATTTTTCCAAGGAGATATCAGGCTG
CTCATGGATGACCTCAAGGTGCTTCAACCCACTGTCTTCCCCGTGGTTCCAAGACTGCTGAACCGGATGT
TTGACCGAATTTTCGGACAAGCAAACACCACGCTGAAGCGATGGCTCTTGGACTTTGCCTCCAAGAGGAA
AGAAGCAGAGCTTCGCAGCGGCATCATCAGAAACAACAGCCTGTGGGACCGGCTGATCTTCCACAAAGTA
CAGTCGAGCCTGGGCGGAAGAGTCCGGCTGATGGTGACAGGAGCCGCCCCGGTGTCTGCCACTGTGCTGA
CGTTCCTCAGAGCAGCCCTGGGCTGTCAGTTTTATGAAGGATACGGACAGACAGAGTGCACTGCCGGGTG
CTGCCTGACCATGCCTGGAGACTGGACCGCAGGCCATGTTGGGGCCCCGATGCCGTGCAATTTGATAAAA
CTTGTTGATGTGGAAGAAATGAATTACATGGCTGCCGAGGGCGAGGGCGAGGTGTGTGTGAAAGGGCCAA
ATGTATTTCAGGGCTACTTGAAGGACCCAGCGAAAACAGCAGAAGCTTTGGACAAAGACGGCTGGTTACA
CACAGGGGACATTGGAAAATGGTTACCAAATGGCACCTTGAAAATTATCGACCGGAAAAAGCACATATTT
AAGCTGGCACAAGGAGAATACATAGCCCCTGAAAAGATTGAAAATATCTACATGCGAAGTGAGCCTGTTG
CTCAGGTGTTTGTCCACGGAGAAAGCCTGCAGGCATTTCTCATTGCAATTGTGGTACCAGATGTTGAGAC
ATTATGTTCCTGGGCCCAAAAGAGAGGATTTGAAGGGTCGTTTGAGGAACTGTGCAGAAATAAGGATGTC
AAAAAAGCTATCCTCGAAGATATGGTGAGACTTGGGAAGGATTCTGGTCTGAAACCATTTGAACAGGTCA
AAGGCATCACATTGCACCCTGAATTATTTTCTATCGACAATGGCCTTCTGACTCCAACAATGAAGGCGAA
AAGGCCAGAGCTGCGGAACTATTTCAGGTCGCAGATAGATGACCTCTATTCCACTATCAAGGTTTAG

Translation (698 aa):
MQAHELFRYFRMPELVDFRQYVRTLPTNTLMGFGAFAALTTFWYATRPKPLKPPCDLSMQSVEVAGSGGA
RRSALLDSDEPLVYFYDDVTTLYEGFQRGIQVSNNGPCLGSRKPDQPYEWLSYKQVAELSECIGSALIQK
GFKTAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVDKPEKAKLLL
EGVENKLIPGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRRKPKPPAPEDLAVICFTSGTT
GNPKGAMVTHRNIVSDCSAFVKATENTVNPCPDDTLISFLPLAHMFERVVECVMLCHGAKIGFFQGDIRL
LMDDLKVLQPTVFPVVPRLLNRMFDRIFGQANTTLKRWLLDFASKRKEAELRSGIIRNNSLWDRLIFHKV
QSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIK
LVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKKHIF
KLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGFEGSFEELCRNKDV
KKAILEDMVRLGKDSGLKPFEQVKGITLHPELFSIDNGLLTPTMKAKRPELRNYFRSQIDDLYSTIKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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