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Report for CCDS38460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38460.1 Public Mus musculus 3 Gucy1b1 23 108 98 CCDS HistoryNCBI Gene:54195Re-query CCDS DB by CCDS ID:38460.1Re-query CCDS DB by GeneID:54195See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029635.13 ENSMUSP00000029635.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029635.13Link to Ensembl Protein Viewer:ENSMUSP00000029635.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029635Re-query CCDS DB by Protein ID:ENSMUSP00000029635
Original member Current member NCBI NM_017469.4 NP_059497.1 Accepted alive Link to Nucleotide Sequence:NM_017469.4Link to Protein Sequence:NP_059497.1Re-query CCDS DB by Nucleotide ID:NM_017469Re-query CCDS DB by Protein ID:NP_059497Link to BLAST:NP_059497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059497.1 620 O54865 620 100% 0 0

Chromosomal Locations for CCDS 38460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 82033255 82033281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82034312 82034438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82034742 82034896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82035280 82035420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82037917 82038154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82039726 82039923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82043120 82043253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82044129 82044245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82045399 82045629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82046513 82046710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82058241 82058359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82061020 82061120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82073998 82074071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82074572 82074574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGTACGGTTTCGTGAACCATGCCCTGGAGCTGCTGGTGATCCGCAATTATGGTCCCGAGGTGTGGGAAG
ACATCAAAAAAGAGGCACAGCTGGATGAAGAAGGCCAGTTTCTTGTCAGAATAATATACGATGATTCCAA
AACATATGACCTGGTGGCTGCTGCAAGCAAAGTCCTCAACCTCAATGCTGGCGAAATCCTGCAGATGTTT
GGGAAGATGTTTTTCGTCTTCTGCCAGGAGTCTGGCTATGATACCATCTTGCGTGTCCTGGGATCTAATG
TCAGAGAGTTTTTGCAGAACCTCGATGCCCTGCATGACCACCTCGCCACCATTTACCCAGGGATGCGCGC
GCCTTCCTTCAGGTGCACCGATGCGGAGAAAGGCAAAGGGCTCATCCTGCACTACTACTCGGAAAGAGAG
GGGCTTCAGGACATCGTGATCGGGATTATCAAGACTGTTGCTCAACAGATACACGGCACTGAGATAGACA
TGAAGGTGATTCAGCAAAGAAATGAAGAATGTGATCACACCCAGTTTTTAATTGAAGAAAAGGAATCAAA
AGAAGAGGATTTTTATGAAGATCTGGATAGGTTTGAAGAGAATGGTACCCAGGAATCACGTATCAGCCCT
TACACCTTCTGCAAAGCATTTCCTTTTCACATCATATTTGACCGGAACCTAGTGGTCACTCAGTGTGGCA
ATGCCATCTACAGAGTGCTCCCCCAGCTCCAGCCTGGGAACTGCAGCCTTCTGTCTGTCTTCTCTCTGGT
CCGCCCTCACATCGACATCAGTTTCCATGGGATTCTTTCACACATCAATACAGTCTTTGTACTGAGAAGC
AAGGAAGGGTTGCTGGATGTGGAGAAACTTGAGTGTGAGGATGAACTGACTGGAGCAGAGATTAGCTGCT
TACGTCTCAAAGGCCAAATGATCTACTTACCAGAAGCAGATAGCATCCTCTTCCTCTGTTCACCAAGTGT
GATGAACCTGGACGACCTAACAAGAAGAGGCCTGTATCTGAGTGACATCCCTCTCCACGATGCTACCCGA
GACCTGGTTCTTTTGGGAGAACAGTTCCGGGAGGAGTACAAACTGACACAAGAGCTGGAAATCCTCACCG
ACAGGCTGCAGCTCACACTGAGAGCCTTGGAGGATGAGAAGAAAAAGACAGACACATTGCTGTATTCTGT
CCTTCCTCCATCTGTTGCCAATGAGCTGAGACACAAGCGCCCAGTGCCTGCCAAAAGATACGACAATGTG
ACCATCCTCTTCAGCGGCATTGTGGGCTTCAATGCTTTCTGTAGCAAGCATGCATCTGGAGAAGGGGCCA
TGAAGATTGTCAATCTCCTCAACGATCTCTACACCCGATTTGACACACTGACTGATTCACGAAAAAACCC
ATTTGTTTACAAGGTGGAAACAGTTGGTGACAAGTATATGACAGTGAGTGGCTTGCCAGAACCTTGTATC
CACCATGCACGGTCCATTTGCCACCTGGCTTTAGACATGATGGAAATTGCTGGTCAAGTTCAAGTAGATG
GTGAATCTGTTCAGATAACAATCGGGATCCATACCGGGGAGGTGGTGACAGGTGTGATTGGACAGCGGAT
GCCTCGGTATTGTCTCTTTGGGAATACCGTCAACCTCACAAGCAGGACAGAAACCACAGGAGAAAAGGGA
AAGATAAATGTTTCCGAATATACATACAGGTGTCTCATGTCTCCAGAAAACTCGGATCCACTGTTCCATT
TGGAGCACAGAGGCCCAGTGTCTATGAAGGGCAAGAAGGAACCAATGCAAGTCTGGTTCCTATCCAGGAA
AAATACAGGCACGGAGGAAACAAATGAGGAGGATGAAAACTGA

Translation (620 aa):
MYGFVNHALELLVIRNYGPEVWEDIKKEAQLDEEGQFLVRIIYDDSKTYDLVAAASKVLNLNAGEILQMF
GKMFFVFCQESGYDTILRVLGSNVREFLQNLDALHDHLATIYPGMRAPSFRCTDAEKGKGLILHYYSERE
GLQDIVIGIIKTVAQQIHGTEIDMKVIQQRNEECDHTQFLIEEKESKEEDFYEDLDRFEENGTQESRISP
YTFCKAFPFHIIFDRNLVVTQCGNAIYRVLPQLQPGNCSLLSVFSLVRPHIDISFHGILSHINTVFVLRS
KEGLLDVEKLECEDELTGAEISCLRLKGQMIYLPEADSILFLCSPSVMNLDDLTRRGLYLSDIPLHDATR
DLVLLGEQFREEYKLTQELEILTDRLQLTLRALEDEKKKTDTLLYSVLPPSVANELRHKRPVPAKRYDNV
TILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCI
HHARSICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKG
KINVSEYTYRCLMSPENSDPLFHLEHRGPVSMKGKKEPMQVWFLSRKNTGTEETNEEDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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