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Report for CCDS38585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38585.1 Public Mus musculus 3 Chia1 23 108 98 CCDS HistoryNCBI Gene:81600Re-query CCDS DB by CCDS ID:38585.1Re-query CCDS DB by GeneID:81600See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079132.11 ENSMUSP00000078134.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079132.11Link to Ensembl Protein Viewer:ENSMUSP00000078134.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079132Re-query CCDS DB by Protein ID:ENSMUSP00000078134
Original member Current member NCBI NM_023186.3 NP_075675.2 Accepted alive Link to Nucleotide Sequence:NM_023186.3Link to Protein Sequence:NP_075675.2Re-query CCDS DB by Nucleotide ID:NM_023186Re-query CCDS DB by Protein ID:NP_075675Link to BLAST:NP_075675.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075675.2 473 Q91XA9 473 100% 0 0

Chromosomal Locations for CCDS 38585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 106113385 106113409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106114645 106114674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106115167 106115368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106121638 106121694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106122366 106122531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106128150 106128274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106128451 106128574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106128835 106129020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106130619 106130738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106130825 106130966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106131773 106132017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCCAAGCTACTTCTCGTCACAGGTCTGGCTCTTCTGCTGAATGCTCAGCTGGGGTCTGCCTACAATC
TGATATGCTATTTCACCAACTGGGCCCAGTATCGGCCAGGTCTGGGGAGCTTCAAGCCTGATGACATTAA
CCCCTGCCTGTGTACTCACCTGATCTATGCCTTTGCTGGGATGCAGAACAATGAGATCACCACCATAGAA
TGGAATGATGTTACTCTCTATAAAGCTTTCAATGACTTGAAAAACAGGAACAGCAAACTGAAAACCCTCC
TGGCAATTGGAGGCTGGAACTTTGGAACTGCTCCTTTCACTACCATGGTTTCCACTTCTCAGAACCGCCA
GACCTTCATTACCTCAGTCATCAAATTTCTGCGTCAGTATGGGTTTGATGGACTGGACCTGGACTGGGAA
TACCCAGGCTCACGTGGGAGCCCTCCTCAGGACAAGCATCTCTTCACTGTCCTGGTGAAGGAAATGCGTG
AAGCTTTTGAGCAGGAGGCTATTGAGAGCAACAGGCCCAGACTGATGGTTACTGCTGCTGTAGCTGGTGG
GATTTCCAACATCCAGGCTGGCTATGAGATCCCTGAACTTTCTAAGTACCTGGATTTCATCCATGTCATG
ACATATGACCTCCATGGCTCCTGGGAGGGCTACACTGGGGAGAATAGTCCTCTTTACAAATACCCTACTG
AGACTGGTAGCAATGCCTACCTCAATGTGGATTATGTCATGAACTATTGGAAGAACAATGGAGCCCCAGC
TGAGAAGCTCATTGTTGGATTCCCAGAGTATGGACACACCTTCATCCTGAGAAACCCCTCTGATAATGGA
ATTGGTGCCCCTACCTCTGGTGATGGCCCTGCTGGGCCCTATACCAGACAGGCTGGGTTCTGGGCCTACT
ATGAGATTTGCACCTTTCTGAGAAGTGGAGCCACTGAGGTCTGGGATGCCTCCCAAGAAGTGCCCTATGC
CTATAAGGCCAACGAGTGGCTTGGCTATGACAATATCAAGAGCTTCAGTGTTAAGGCTCAGTGGCTTAAG
CAGAACAATTTTGGAGGTGCCATGATCTGGGCCATTGACCTTGATGACTTCACTGGCTCTTTCTGTGATC
AGGGAAAATTTCCTCTGACTTCTACTTTGAACAAAGCCCTTGGCATATCCACTGAAGGTTGCACAGCTCC
TGACGTGCCTTCCGAGCCAGTGACTACTCCTCCAGGAAGTGGGAGTGGGGGTGGAAGCTCCGGAGGAAGC
TCTGGAGGCAGTGGATTCTGTGCCGACAAAGCAGATGGCCTCTACCCTGTGGCAGATGACAGAAATGCTT
TTTGGCAGTGCATCAATGGAATCACATACCAGCAGCATTGTCAAGCAGGGCTTGTTTTTGATACCAGCTG
TAATTGCTGCAACTGGCCATGA

Translation (473 aa):
MAKLLLVTGLALLLNAQLGSAYNLICYFTNWAQYRPGLGSFKPDDINPCLCTHLIYAFAGMQNNEITTIE
WNDVTLYKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFITSVIKFLRQYGFDGLDLDWE
YPGSRGSPPQDKHLFTVLVKEMREAFEQEAIESNRPRLMVTAAVAGGISNIQAGYEIPELSKYLDFIHVM
TYDLHGSWEGYTGENSPLYKYPTETGSNAYLNVDYVMNYWKNNGAPAEKLIVGFPEYGHTFILRNPSDNG
IGAPTSGDGPAGPYTRQAGFWAYYEICTFLRSGATEVWDASQEVPYAYKANEWLGYDNIKSFSVKAQWLK
QNNFGGAMIWAIDLDDFTGSFCDQGKFPLTSTLNKALGISTEGCTAPDVPSEPVTTPPGSGSGGGSSGGS
SGGSGFCADKADGLYPVADDRNAFWQCINGITYQQHCQAGLVFDTSCNCCNWP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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