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Report for CCDS38676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38676.1 Public Mus musculus 3 St6galnac5 23 108 98 CCDS HistoryNCBI Gene:26938Re-query CCDS DB by CCDS ID:38676.1Re-query CCDS DB by GeneID:26938See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044278.5 ENSMUSP00000036227.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044278.5Link to Ensembl Protein Viewer:ENSMUSP00000036227.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044278Re-query CCDS DB by Protein ID:ENSMUSP00000036227
Original member Current member NCBI NM_012028.5 NP_036158.3 Accepted alive Link to Nucleotide Sequence:NM_012028.5Link to Protein Sequence:NP_036158.3Re-query CCDS DB by Nucleotide ID:NM_012028Re-query CCDS DB by Protein ID:NP_036158Link to BLAST:NP_036158.3

Chromosomal Locations for CCDS 38676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152821511 152821742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152840144 152840251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152846261 152846670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152981058 152981300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152982003 152982017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGAAGACCCTGATGCGCCATGGTCTGGCAGTGTGTTTAGTGCTCACTACCATGTGCACCAGCTTGTTGC
TCGTGTACAGCAGCCTCGGCAGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGGCGGCAACCGCGACTGGCAGCACGCAGCTTGTGGAGAGCAGTCCCCAGCCACGTAGAACCGCCCCC
GCAGGACCCCGGCAGCTCGAAGGATACCTCGGTGTAGCAGACCACAAGCCCCTGAAAATGCATTGCAAGG
ATTGCGCCCTGGTGACCAGCTCAGGGCATCTGCTGCGTAGTCAGCAGGGCCCCCACATCGACCAGACAGA
GTGTGTTATCCGCATGAATGATGCCCCCACCCGAGGCTATGGGCTTGACGTGGGCAACCGCACGAGCCTG
CGGGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGTGAGCCAGG
GCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGCCGGGATGGCAAGGGCCAGGCGTACAACAA
CCTACAGCTCCTTAGCCAAGTGCTGCCTCGGCTGAAGGCCTTCATGATCACGCGCCACAGGATGCTGCAG
TTCGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAGGAAGATCTCCAACACTTGGCTGAGCACTGGCT
GGTTCACCATGACAATTGCTCTGGAGCTGTGTGACAGGATCGATGTTTACGGCATGGTGCCCCCAGACTT
CTGCAGGGACCCAAAGCATCCTTCCGTACCCTATCATTACTATGAGCCTTCAGGACCCGATGAATGTACA
ATGTACCTCTCTCACGAGCGAGGACGCAAGGGCAGTCATCACCGTTTCATTACAGAGAAACGGGTGTTTA
AGAACTGGGCACGGACATTCAACATTCACTTTTTCCAACCAGACTGGAAACCAGAATCACCCGCTGTGAA
TCATGCCGAGGGTAAGCCTGTGTTCTGA

Translation (335 aa):
MKTLMRHGLAVCLVLTTMCTSLLLVYSSLGSQKERPPQQQQQQQQQQQAATATGSTQLVESSPQPRRTAP
AGPRQLEGYLGVADHKPLKMHCKDCALVTSSGHLLRSQQGPHIDQTECVIRMNDAPTRGYGLDVGNRTSL
RVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQAYNNLQLLSQVLPRLKAFMITRHRMLQ
FDELFKQETGKDRKISNTWLSTGWFTMTIALELCDRIDVYGMVPPDFCRDPKHPSVPYHYYEPSGPDECT
MYLSHERGRKGSHHRFITEKRVFKNWARTFNIHFFQPDWKPESPAVNHAEGKPVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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