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Report for CCDS38720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38720.1 Public Mus musculus 4 Galt 23 108 98 CCDS HistoryNCBI Gene:14430Re-query CCDS DB by CCDS ID:38720.1Re-query CCDS DB by GeneID:14430See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 38720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084695.10 ENSMUSP00000081745.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084695.10Link to Ensembl Protein Viewer:ENSMUSP00000081745.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084695Re-query CCDS DB by Protein ID:ENSMUSP00000081745
Original member Current member NCBI NM_016658.4 NP_057867.2 Accepted alive Link to Nucleotide Sequence:NM_016658.4Link to Protein Sequence:NP_057867.2Re-query CCDS DB by Nucleotide ID:NM_016658Re-query CCDS DB by Protein ID:NP_057867Link to BLAST:NP_057867.2

Chromosomal Locations for CCDS 38720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41755628 41755652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41755961 41756130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41756347 41756422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41756513 41756561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41756682 41756811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41756939 41756995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41757156 41757278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41757460 41757592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41757695 41757778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41758084 41758238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41758503 41758583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGCAGCGACCTTCCGGGCGAGCGAACACCAGCATATTCGCTACAACCCGCTCCAGGACGAGTGGGTGT
TAGTGTCGGCTCATCGCATGAAGCGGCCCTGGCAAGGACAAGTGGAGCCCCAGCTTCTGAAGACAGTGCC
CCGCCACGACCCACTCAACCCTCTGTGTCCCGGGGCCACACGAGCTAATGGGGAGGTGAATCCCCACTAT
GATGGTACCTTTCTGTTTGACAATGACTTCCCGGCTCTGCAGCCCGATGCTCCGGATCCAGGACCCAGTG
ACCACCCTCTCTTCCGAGCAGAGGCCGCCAGAGGAGTTTGTAAGGTCATGTGCTTCCACCCCTGGTCGGA
TGTGACGCTGCCACTCATGTCTGTCCCTGAGATCCGAGCTGTCATCGATGCATGGGCCTCAGTCACAGAG
GAGCTGGGTGCCCAGTACCCTTGGGTGCAGATCTTTGAAAATAAAGGAGCCATGATGGGCTGTTCTAACC
CCCATCCCCACTGCCAGGTTTGGGCTAGCAGCTTCCTGCCAGATATCGCCCAGCGTGAAGAGCGATCCCA
GCAGACCTATCACAGCCAGCATGGAAAACCTTTGTTATTGGAATATGGTCACCAAGAGCTCCTCAGGAAG
GAACGTCTGGTCCTAACCAGTGAGCACTGGATAGTTCTGGTCCCCTTCTGGGCAGTGTGGCCTTTCCAGA
CACTTCTGCTGCCCCGGCGGCACGTGCGGCGGCTACCTGAGCTGAACCCCGCTGAGCGTGATGATCTCGC
CTCCATCATGAAGAAGCTCTTGACCAAGTACGACAATCTATTTGAGACATCCTTTCCCTACTCCATGGGC
TGGCATGGGGCTCCCACGGGATTAAAGACTGGAGCCACCTGTGACCACTGGCAGCTCCACGCCCACTACT
ACCCCCCACTTCTGCGATCCGCAACTGTCCGGAAGTTCATGGTTGGCTATGAAATGCTTGCCCAGGCCCA
GCGTGACCTCACTCCCGAACAGGCCGCAGAAAGATTAAGGGCGCTTCCCGAGGTACACTATTGCCTGGCG
CAGAAAGACAAGGAAACGGCAGCCATTGCTTGA

Translation (360 aa):
MAATFRASEHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPQLLKTVPRHDPLNPLCPGATRANGEVNPHY
DGTFLFDNDFPALQPDAPDPGPSDHPLFRAEAARGVCKVMCFHPWSDVTLPLMSVPEIRAVIDAWASVTE
ELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQQTYHSQHGKPLLLEYGHQELLRK
ERLVLTSEHWIVLVPFWAVWPFQTLLLPRRHVRRLPELNPAERDDLASIMKKLLTKYDNLFETSFPYSMG
WHGAPTGLKTGATCDHWQLHAHYYPPLLRSATVRKFMVGYEMLAQAQRDLTPEQAAERLRALPEVHYCLA
QKDKETAAIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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