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Report for CCDS39105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39105.1 Public Mus musculus 5 Atp8a1 23 108 98 CCDS HistoryNCBI Gene:11980Re-query CCDS DB by CCDS ID:39105.1Re-query CCDS DB by GeneID:11980See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135930.7 ENSMUSP00000118379.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135930.7Link to Ensembl Protein Viewer:ENSMUSP00000118379.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000135930Re-query CCDS DB by Protein ID:ENSMUSP00000118379
Original member Current member NCBI NM_009727.3 NP_033857.1 Accepted alive Link to Nucleotide Sequence:NM_009727.3Link to Protein Sequence:NP_033857.1Re-query CCDS DB by Nucleotide ID:NM_009727Re-query CCDS DB by Protein ID:NP_033857Link to BLAST:NP_033857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033857.1 1149 P70704-2 1149 100% 0 0

Chromosomal Locations for CCDS 39105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 67622599 67622696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67624010 67624101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67630691 67630783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67631487 67631575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67647693 67647800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67648525 67648581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67651588 67651649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67655906 67655984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67659870 67659992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67660094 67660168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67667321 67667431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67667524 67667707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67682758 67682930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67702980 67703044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67705906 67706044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67729792 67729931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67732169 67732253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67738413 67738482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67745580 67745629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67747278 67747360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67749051 67749156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67751013 67751085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67761114 67761202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67762516 67762593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67764864 67764991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67767020 67767185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67769052 67769163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67774723 67774850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67776129 67776198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67780988 67781061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67786626 67786666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67805657 67805702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67812088 67812186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67813092 67813191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67814609 67814723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67847162 67847210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3450 nt):
ATGCCGACCATGCGGAGGACAGTGTCGGAGATCCGCTCGCGCGCGGAAGGTTATGAGAAGACAGATGATG
TTTCAGAGAAGACCTCGCTGGCAGATCAGGAGGAAGTGAGAACCATCTTCATCAACCAGCCTCAGCTGAC
AAAATTCTGCAACAACCACGTCAGTACTGCAAAATACAACGTGATCACATTCCTTCCGAGGTTCCTCTAT
TCTCAGTTCCGAAGAGCGGCTAATTCGTTCTTTCTCTTTATTGCCCTGCTCCAGCAAATTCCTGATGTGT
CGCCGACCGGTCGTTACACAACACTGGTTCCTCTCTTATTTATTTTAGCTGTGGCTGCTATTAAAGAGAT
AATAGAAGATATTAAACGACACAAGGCTGATAATGCTGTGAACAAGAAACAGACACAAGTTTTGAGAAAT
GGTGCATGGGAAATTGTTCACTGGGAAAAGGTAAATGTTGGAGATATAGTTATAATAAAAGGCAAAGAGT
ATATACCTGCTGACACTGTCCTTCTCTCGTCAAGTGAGCCCCAGGCCATGTGCTACATCGAGACATCCAA
CTTAGATGGTGAAACAAACTTGAAAATTAGACAAGGCTTACCGGCAACATCGGATATCAAAGACATTGAC
AGTTTGATGAGAATTTCTGGCAGAATCGAGTGTGAAAGTCCAAACCGACATCTCTACGATTTTGTTGGGA
ACATAAGGCTTGATGGCCATGGCACCGTTCCCCTGGGGGCAGACCAGATCCTTCTCCGAGGAGCTCAGTT
AAGAAATACCCAGTGGGTTCATGGGATAGTTGTCTACACTGGCCACGACACCAAGCTGATGCAGAATTCC
ACAAGCCCACCACTTAAACTCTCCAATGTGGAACGGATTACAAATGTACAAATTCTGATTTTATTTTGCA
TCTTAATTGCCATGTCTCTTGTGTGTTCTGTGGGCTCAGCCATTTGGAACCGAAGGCATTCCGGGAAAGA
CTGGTACCTCCATCTACACTATGGTGGCGCTAGTAACTTTGGACTGAACTTCCTGACTTTCATTATCCTT
TTCAACAACCTCATTCCCATCAGCTTGCTGGTCACATTAGAAGTGGTGAAGTTTACTCAGGCATACTTCA
TAAATTGGGATCTTGACATGCATTATGAGCCCACAGACACCGCAGCAATGGCTCGGACATCTAATCTGAA
TGAGGAACTTGGCCAGGTTAAATACATATTTTCTGACAAAACTGGGACCCTGACATGCAATGTGATGCAG
TTCAAGAAGTGCACCATCGCGGGCGTGGCCTATGGGCAGAGCTCACAGTTTGGAGATGAAAAAACCTTTA
ATGACCCGTCGTTGCTGGACAATCTCCAGAATAACCACCCAACCGCACCTATCATCTGTGAATTTCTCAC
AATGATGGCCGTCTGCCACACAGCTGTACCGGAGAGAGAAGGGGACAAGATCATTTATCAGGCTGCATCG
CCAGATGAGGGTGCACTGGTCAGAGCCGCCAAGCAGTTGAATTTTGTCTTCACTGGAAGAACTCCTGACT
CTGTCATCATAGATTCACTGGGGCAGGAAGAAAGATATGAATTGCTCAATGTCCTAGAGTTCACCAGTGC
TAGGAAGAGGATGTCGGTGGTGGTTCGCACTCCATCCGGGAAGTTACGGCTCTACTGCAAAGGAGCTGAC
ACAGTAATTTATGAACGACTTGCAGAGACCTCAAAGTACAAAGAAATCACCCTAAAACACTTGGAACAGT
TTGCTACAGAAGGGCTGAGGACTTTGTGTTTTGCTGTGGCTGAGATTTCTGAGAGCGACTTCGAGGAGTG
GCGGGCCGTCTACCACCGCGCATCCACGTCGGTACAGAACAGGCTGCTGAAGCTGGAGGAGAGCTACGAA
CTAATTGAAAAGAATCTTCAGCTACTTGGAGCTACAGCCATTGAGGATAAATTGCAGGACCAAGTGCCTG
AAACCATAGAAACGCTAATGAAGGCTGACATCAAAATATGGATCCTTACTGGGGACAAGCAAGAAACTGC
CATTAATATTGGACACTCCTGTAGACTCCTCAAGAGGAACATGGGAATGATCGTGATAAACGAGGGCTCT
CTTGACGGCACGAGGGAAACTCTCAGCCGCCACTGCACCACCCTGGGAGATGCTCTTCGGAAGGAAAATG
ATTTTGCTCTTATAATTGATGGGAAGACCCTCAAATATGCCTTAACCTTTGGCGTCCGGCAGTATTTCCT
GGACTTAGCTCTGTCCTGCAAAGCTGTCATTTGCTGCAGGGTTTCTCCTCTTCAGAAGTCCGAGGTTGTC
GAGATGGTTAAGAAACAAGTCAAAGTCATCACACTTGCCATCGGGGATGGAGCAAATGACGTCAGCATGA
TCCAGACGGCCCATGTGGGTGTTGGGATAAGCGGCAATGAAGGTTTGCAGGCAGCCAACTCTTCAGATTA
CTCCATCGCTCAGTTCAAATATTTGAAGAATTTGTTGATGGTTCACGGTGCCTGGAATTACAATAGAGTC
TCCAAGTGTATCCTGTACTGCTTCTACAAGAACATCGTGCTCTACATCATCGAGATCTGGTTTGCCTTTG
TCAACGGCTTTTCTGGACAGATCCTCTTTGAAAGATGGTGTATAGGGCTTTATAATGTGATGTTCACAGC
GATGCCTCCCTTGACACTTGGAATATTTGAGAGATCGTGCAGAAAGGAGAACATGTTGAAGTATCCTGAG
TTGTACAAAACATCCCAGAATGCTCTGGACTTCAATACCAAGGTTTTCTGGGTTCATTGTTTGAATGGCC
TCTTCCACTCCGTTATTCTGTTTTGGTTCCCACTGAAAGCCCTGCAGTATGGCACGGTATTTGGAAATGG
GAAAACCTCAGATTACCTGCTTCTGGGAAACTTTGTTTATACTTTTGTAGTGATAACTGTGTGCTTGAAA
GCTGGACTGGAAACCTCCTATTGGACATGGTTCAGCCACATCGCCATCTGGGGCAGCATCGCGCTCTGGG
TGGTGTTCTTCGGGATCTACTCATCTCTGTGGCCTGCCGTGCCCATGGCCCCTGACATGTCCGGAGAGGC
AGCCATGCTCTTCAGCTCTGGAGTCTTCTGGGTGGGCTTGCTCTCCATCCCTGTGGCGTCCTTGCTTCTG
GATGTGCTGTACAAAGTCATCAAGAGGACGGCCTTTAAAACCTTAGTGGATGAAGTTCAGGAGCTTGAGG
CGAAATCTCAAGACCCGGGCGCAGTCGTACTTGGAAAGAGCCTCACGGAGAGAGCGCAGCTGCTCAAGAA
CGTCTTTAAGAAGAACCACGTGAATCTGTACCGCTCCGAGTCCCTGCAGCAGAACCTGCTTCACGGCTAT
GCTTTCTCTCAAGATGAAAACGGCATCGTCTCACAGTCTGAAGTCATCAGAGCCTATGACACCACGAAAC
AGAGGCCCGATGAGTGGTGA

Translation (1149 aa):
MPTMRRTVSEIRSRAEGYEKTDDVSEKTSLADQEEVRTIFINQPQLTKFCNNHVSTAKYNVITFLPRFLY
SQFRRAANSFFLFIALLQQIPDVSPTGRYTTLVPLLFILAVAAIKEIIEDIKRHKADNAVNKKQTQVLRN
GAWEIVHWEKVNVGDIVIIKGKEYIPADTVLLSSSEPQAMCYIETSNLDGETNLKIRQGLPATSDIKDID
SLMRISGRIECESPNRHLYDFVGNIRLDGHGTVPLGADQILLRGAQLRNTQWVHGIVVYTGHDTKLMQNS
TSPPLKLSNVERITNVQILILFCILIAMSLVCSVGSAIWNRRHSGKDWYLHLHYGGASNFGLNFLTFIIL
FNNLIPISLLVTLEVVKFTQAYFINWDLDMHYEPTDTAAMARTSNLNEELGQVKYIFSDKTGTLTCNVMQ
FKKCTIAGVAYGQSSQFGDEKTFNDPSLLDNLQNNHPTAPIICEFLTMMAVCHTAVPEREGDKIIYQAAS
PDEGALVRAAKQLNFVFTGRTPDSVIIDSLGQEERYELLNVLEFTSARKRMSVVVRTPSGKLRLYCKGAD
TVIYERLAETSKYKEITLKHLEQFATEGLRTLCFAVAEISESDFEEWRAVYHRASTSVQNRLLKLEESYE
LIEKNLQLLGATAIEDKLQDQVPETIETLMKADIKIWILTGDKQETAINIGHSCRLLKRNMGMIVINEGS
LDGTRETLSRHCTTLGDALRKENDFALIIDGKTLKYALTFGVRQYFLDLALSCKAVICCRVSPLQKSEVV
EMVKKQVKVITLAIGDGANDVSMIQTAHVGVGISGNEGLQAANSSDYSIAQFKYLKNLLMVHGAWNYNRV
SKCILYCFYKNIVLYIIEIWFAFVNGFSGQILFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPE
LYKTSQNALDFNTKVFWVHCLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVYTFVVITVCLK
AGLETSYWTWFSHIAIWGSIALWVVFFGIYSSLWPAVPMAPDMSGEAAMLFSSGVFWVGLLSIPVASLLL
DVLYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGKSLTERAQLLKNVFKKNHVNLYRSESLQQNLLHGY
AFSQDENGIVSQSEVIRAYDTTKQRPDEW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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