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Report for CCDS39389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39389.1 Public Mus musculus 5 Cyp3a41b 23 108 98 CCDS HistoryNCBI Gene:100041375Re-query CCDS DB by CCDS ID:39389.1Re-query CCDS DB by GeneID:100041375See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075837.7 ENSMUSP00000075234.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075837.7Link to Ensembl Protein Viewer:ENSMUSP00000075234.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075837Re-query CCDS DB by Protein ID:ENSMUSP00000075234
Original member Current member NCBI NM_001105159.1 NP_001098629.1 Accepted alive Link to Nucleotide Sequence:NM_001105159.1Link to Protein Sequence:NP_001098629.1Re-query CCDS DB by Nucleotide ID:NM_001105159Re-query CCDS DB by Protein ID:NP_001098629Link to BLAST:NP_001098629.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098629.1 504 Q9JMA7 504 100% 0 0

Chromosomal Locations for CCDS 39389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145559122 145559217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145562747 145562909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145564337 145564563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145566707 145566867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145569371 145569440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145570331 145570458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145573043 145573191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145573463 145573551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145573631 145573744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145578096 145578195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145580052 145580104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145582515 145582608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145584569 145584639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGAACCTATTTTCAGCTCTCTCACTGGATACATGGGTCCTCCTGGCAATCATCCTGGTGCTCCTCTACC
GATATGGGACCCGTACACATGGACTTTTTAAGAAACAGGGGATTCCTGGACCCAAACCTCTGCCATTTTT
AGGCACTGTGCTGAATTATTACAAGGGTTTATGGAAATTTGACATGGAGTGCTATGAAAAGTATGGAAAA
ACATGGGGGTTGTTTGATGGTCAAATGCCTCTCTTTGTCATCACGGACCCAGAGATGATTAAGAATGTTC
TAGTGAAGGAATGTTTTTCTGTCTTCACAAACCGGCGGGAATTTGGCCCAGTGGGTATAATGAGTAAAGC
TATCTCAATATCTAAGGATGAGGAATGGAAGAGATATAGAGCTTTGCTGTCCCCCACATTCACCAGTGGA
AAACTCAAGGAGATGTTTCCTGTCATTGAACAGTATGGAGACATTTTGGTAAAGTACTTGATGCAAGAGG
CAGAGAAAGGCAAGCCTGTTACTATGAAAGATGTGTTAGGTGCTTACAGCATAGATGTGATCACCAGCAC
ATCATTTGGAGTGAATGTGGATTCCCTCAACAACCCAGAGGATCCCTTTGTGGAGAAAGCCAAAGGGATT
TTAAGAGTTGACTTTTTTGATCCTTTGGTCTTCTCAGTTGTACTTTTTCCATTCCTGACACCAGTATATG
AAATGTTAAATATCTGCATGTTCCCAAAGGATTCAATAGAATTTTTCAAAAAATTTGTGAACAGAATGAA
GGAAAGCCGCCTCGATTCTAAGCAGAAGCACCGAGTTGATTTTCTTCAGCTGATGATGAACGCTCATAAT
AATTCCAAAGACAAAGACTCTCATAAAGCCCTTTCTGACATGGAGATCACAGCCCAGTCAATTGTCTTTA
TTTTTGCTGGGTATGAAACCACCAGTAGCACACTTTCCTTCACCCTGTATTGTTTGGCCACTCACCCTGA
TATCCAGAAGAAACTGCAGGAAGAGATCGATGAGACTCTGCCCAATAAGGCACCTCCCACCTATGATACT
GTGATGGAGATGGAATACCTGGATATGGTGCTTAATGAAACCCTCAGATTATATCCCATTGGTAATAGAC
TTGAGAGATTCTGTAAGAAAGATGTTGAACTCAATGGTGTGTATATCCCCAAAGGGTCAACAGTGATGAT
TCCATCTTATGCTCTTCACCATGACCCACAGCACTGGCCAGAGCCTGAAGAATTCCAACCTGAAAGGTTC
AGCAAAGAGAACAAGGGCAGCATTGATCCTTATTTATATATGCCCTTTGGAATTGGACCCAGGAACTGCA
TTGGCATGAGGTTTGCTTTCATGACTATGAAACTTGCTCTCACTAAAGTTATGCAGAACTTTTCCTTCCA
GCCTTGTCAGGAAACACAGATACCTCTGAAATTAAGCAGACAAGGACTTCTTCAACCAGAAAAACCCATT
GTTCTAAAGGTTGTACCACGGGATGTAGTTATAACTGGAGCATGA

Translation (504 aa):
MNLFSALSLDTWVLLAIILVLLYRYGTRTHGLFKKQGIPGPKPLPFLGTVLNYYKGLWKFDMECYEKYGK
TWGLFDGQMPLFVITDPEMIKNVLVKECFSVFTNRREFGPVGIMSKAISISKDEEWKRYRALLSPTFTSG
KLKEMFPVIEQYGDILVKYLMQEAEKGKPVTMKDVLGAYSIDVITSTSFGVNVDSLNNPEDPFVEKAKGI
LRVDFFDPLVFSVVLFPFLTPVYEMLNICMFPKDSIEFFKKFVNRMKESRLDSKQKHRVDFLQLMMNAHN
NSKDKDSHKALSDMEITAQSIVFIFAGYETTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDT
VMEMEYLDMVLNETLRLYPIGNRLERFCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWPEPEEFQPERF
SKENKGSIDPYLYMPFGIGPRNCIGMRFAFMTMKLALTKVMQNFSFQPCQETQIPLKLSRQGLLQPEKPI
VLKVVPRDVVITGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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