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Report for CCDS39427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39427.1 Public Mus musculus 6 Ndufa4 23 108 98 CCDS HistoryNCBI Gene:17992Re-query CCDS DB by CCDS ID:39427.1Re-query CCDS DB by GeneID:17992See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204978.2 ENSMUSP00000144932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204978.2Link to Ensembl Protein Viewer:ENSMUSP00000144932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204978Re-query CCDS DB by Protein ID:ENSMUSP00000144932
Original member Current member EBI ENSMUST00000204714.1 ENSMUSP00000145413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204714.1Link to Ensembl Protein Viewer:ENSMUSP00000145413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204714Re-query CCDS DB by Protein ID:ENSMUSP00000145413
Original member Current member NCBI NM_010886.3 NP_035016.1 Accepted alive Link to Nucleotide Sequence:NM_010886.3Link to Protein Sequence:NP_035016.1Re-query CCDS DB by Nucleotide ID:NM_010886Re-query CCDS DB by Protein ID:NP_035016Link to BLAST:NP_035016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035016.1 82 Q62425 82 100% 0 0

Chromosomal Locations for CCDS 39427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 11900535 11900591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 11905202 11905262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 11906020 11906108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 11907324 11907365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (249 nt):
ATGCTCCGCCAGATCCTCGGGCAAGCCAAGAAGCATCCCAGCTTGATTCCTCTCTTCGTATTTATTGGAG
CAGGGGGTACTGGAGCAGCACTGTATGTGATGCGCTTGGCACTGTTTAATCCAGATGTCAGCTGGGACAG
AAAGAACAACCCAGAGCCATGGAACAAACTGGGTCCCAATGAACAATATAAGTTCTACTCTGTGAATGTG
GACTACAGCAAACTGAAGAAAGAAGGCCCAGACTTCTAA

Translation (82 aa):
MLRQILGQAKKHPSLIPLFVFIGAGGTGAALYVMRLALFNPDVSWDRKNNPEPWNKLGPNEQYKFYSVNV
DYSKLKKEGPDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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