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Report for CCDS39510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39510.1 Public Mus musculus 6 St3gal5 23 108 98 CCDS HistoryNCBI Gene:20454Re-query CCDS DB by CCDS ID:39510.1Re-query CCDS DB by GeneID:20454See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114112.3 ENSMUSP00000109747.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114112.3Link to Ensembl Protein Viewer:ENSMUSP00000109747.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114112Re-query CCDS DB by Protein ID:ENSMUSP00000109747
Original member NCBI NM_011375.3 NP_035505.2 Updated not alive Link to Nucleotide Sequence:NM_011375.3Link to Protein Sequence:NP_035505.2Re-query CCDS DB by Nucleotide ID:NM_011375Re-query CCDS DB by Protein ID:NP_035505
Current member NCBI NM_011375.4 NP_035505.2 Accepted alive Link to Nucleotide Sequence:NM_011375.4Link to Protein Sequence:NP_035505.2Re-query CCDS DB by Nucleotide ID:NM_011375Re-query CCDS DB by Protein ID:NP_035505Link to BLAST:NP_035505.2

Chromosomal Locations for CCDS 39510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72128266 72128387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72132052 72132163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72142140 72142483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72147069 72147255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72149019 72149177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72153431 72153670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGCCAAGTGAGTTCACCTCTGCAAAGCTGAGAAGTGATTGCTCAAGGACCTCCCTGCAATGGTACACCC
GAACCCAGCACAAGATGAGAAGACCCAGCTTGTTAATAAAAGACATCTGCAAGTGCACGTTGGTTGCATT
TGGAGTCTGGCTCCTGTACATCCTCATTTTGAATTACACCGCTGAAGAATGTGACATGAAAAGAATGCAC
TATGTGGACCCTGACCGGATAAAGAGAGCTCAGAGCTATGCTCAGGAAGTCTTGCAGAAGGAATGTCGGC
CCAGGTACGCGAAGACGGCTATGGCTCTGTTATTTGAGGACAGGTACAGCATCAACTTGGAGCCTTTTGT
GCAGAAGGTCCCCACGGCCAGTGAAGCTGAGCTCAAGTATGACCCGCCTTTTGGATTCCGGAAGTTCTCC
AGTAAAGTCCAGAGCCTCTTGGATATGCTGCCCGAACATGACTTTCCTGAACACTTGAGAGCCAAGGCCT
GCAAGCGCTGTGTGGTTGTTGGGAACGGGGGCATCCTGCACGGACTAGAGCTGGGTCACGCCCTCAACCA
GTTCGATGTGGTAATAAGGTTGAACAGTGCGCCAGTTGAGGGTTACTCTGAACACGTTGGGAATAAAACT
ACTATAAGGATGACTTACCCAGAGGGTGCGCCACTGTCGGACGTTGAATACTACGCCAATGATTTGTTCG
TTACTGTTTTATTTAAGAGTGTTGATTTCAAGTGGCTTCAAGCAATGGTAAAAAATGAAAGCCTGCCCTT
TTGGGTTCGCCTCTTCTTTTGGAAGCAAGTGGCAGAAAAAGTCCCACTCCAGCCAAAGCACTTCAGGATT
TTGAACCCAGTTATCATCAAAGAAACTGCCTTCGACATCCTTCAGTACTCAGAGCCTCAGTCAAGATTCT
GGGGCCATGATAAGAACATCCCCACGATCGGCGTCATTGCCGTTGTCTTGGCTACACATCTGTGTGATGA
AGTCAGCCTGGCAGGCTTTGGCTACGACCTCAGTCAACCCAGGACCCCTCTGCACTACTTTGACAGTCAG
TGCATGGGCGCCATGCACTGGCAGGTCATGCACAATGTGACCACAGAGACCAAGTTCCTCCTGAAGCTCC
TCAAGGAGGGCGTGGTGGAGGACCTCAGCGGCGGCATCCACTGA

Translation (387 aa):
MPSEFTSAKLRSDCSRTSLQWYTRTQHKMRRPSLLIKDICKCTLVAFGVWLLYILILNYTAEECDMKRMH
YVDPDRIKRAQSYAQEVLQKECRPRYAKTAMALLFEDRYSINLEPFVQKVPTASEAELKYDPPFGFRKFS
SKVQSLLDMLPEHDFPEHLRAKACKRCVVVGNGGILHGLELGHALNQFDVVIRLNSAPVEGYSEHVGNKT
TIRMTYPEGAPLSDVEYYANDLFVTVLFKSVDFKWLQAMVKNESLPFWVRLFFWKQVAEKVPLQPKHFRI
LNPVIIKETAFDILQYSEPQSRFWGHDKNIPTIGVIAVVLATHLCDEVSLAGFGYDLSQPRTPLHYFDSQ
CMGAMHWQVMHNVTTETKFLLKLLKEGVVEDLSGGIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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