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Report for CCDS39545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39545.1 Public Mus musculus 6 Gfpt1 23 108 98 CCDS HistoryNCBI Gene:14583Re-query CCDS DB by CCDS ID:39545.1Re-query CCDS DB by GeneID:14583See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113658.7 ENSMUSP00000109288.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113658.7Link to Ensembl Protein Viewer:ENSMUSP00000109288.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113658Re-query CCDS DB by Protein ID:ENSMUSP00000109288
Original member Current member NCBI NM_013528.3 NP_038556.1 Accepted alive Link to Nucleotide Sequence:NM_013528.3Link to Protein Sequence:NP_038556.1Re-query CCDS DB by Nucleotide ID:NM_013528Re-query CCDS DB by Protein ID:NP_038556Link to BLAST:NP_038556.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038556.1 681 P47856-2 681 100% 0 0

Chromosomal Locations for CCDS 39545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87042999 87043005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87050921 87051028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87053751 87053858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87054601 87054726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87056144 87056202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87057630 87057764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87059380 87059441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87060521 87060600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87063805 87063910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87066624 87066787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87067684 87067779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87073382 87073479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87076257 87076377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87077083 87077240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87082473 87082587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87085252 87085379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87086304 87086471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87087317 87087478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87088114 87088158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGTGCGGTATATTTGCTTATTTAAATTACCATGTTCCTCGAACAAGACGAGAAATCTTGGAGACACTAA
TCAAAGGCCTTCAGAGACTGGAATACAGAGGATATGATTCTGCTGGTGTGGGACTTGACGGAGGCAATGA
CAAAGACTGGGAAGCCAACGCCTGCAAAATCCAGCTCATTAAGAAGAAAGGAAAAGTTAAGGCACTGGAT
GAAGAAGTTCACAAACAACAAGATATGGACTTGGATATAGAATTTGATGTGCATCTTGGAATAGCTCATA
CCCGTTGGGCGACACATGGAGAACCCAATCCTGTCAATAGTCACCCCCAGCGCTCTGATAAAAATAATGA
ATTCATTGTTATTCATAATGGAATCATCACCAACTACAAAGACTTGAAAAAGTTTCTGGAAAGCAAAGGC
TATGACTTTGAATCTGAAACAGACACAGAAACCATTGCCAAGCTCGTCAAGTACATGTATGACAACTGGG
AGAGCCAGGACGTCAGTTTTACCACCTTGGTGGAGAGAGTTATCCAACAATTGGAAGGCGCCTTTGCTCT
TGTGTTTAAAAGTGTCCATTTTCCCGGGCAAGCAGTTGGCACAAGGCGAGGTAGCCCTCTCTTGATTGGT
GTGCGGAGTGAACATAAGCTTTCTACAGATCACATTCCGATTCTGTACAGAACAGGCAAAGACAAGAAAG
GAAGCTGCGGTCTTTCCCGTGTGGACAGCACGACATGCCTGTTCCCTGTTGAGGAAAAGGCAGTTGAATA
TTACTTTGCTTCTGATGCAAGTGCCGTGATAGAGCACACCAATCGTGTCATCTTTCTGGAAGATGATGAT
GTTGCAGCAGTGGTGGATGGCCGTCTCTCTATCCACCGAATTAAACGAACTGCAGGAGACCATCCTGGCC
GAGCTGTGCAAACTCTCCAGATGGAGCTCCAGCAGATCATGAAGGGCAACTTTAGTTCATTTATGCAGAA
GGAAATTTTTGAGCAGCCAGAATCTGTTGTGAACACAATGAGAGGAAGAGTCAATTTTGATGACTACACT
GTGAATTTGGGAGGTTTGAAAGATCACATTAAGGAGATCCAGCGGTGTCGGCGGTTGATTCTTATTGCTT
GTGGCACAAGTTACCACGCTGGTGTGGCAACCCGTCAGGTCCTGGAGGAGCTGACCGAGCTGCCCGTGAT
GGTGGAGCTTGCCAGTGACTTCTTGGATAGAAACACTCCAGTCTTTCGAGATGATGTTTGCTTTTTCATT
AGTCAATCAGGCGAGACAGCTGACACCCTGATGGGACTTCGTTACTGTAAGGAGAGAGGAGCCTTAACTG
TGGGGATCACAAATACAGTCGGCAGTTCTATATCAAGGGAGACAGATTGCGGGGTTCATATTAATGCTGG
TCCTGAGATTGGCGTGGCCAGTACAAAGGCATACACCAGCCAGTTTGTGTCCCTCGTGATGTTTGCTCTC
ATGATGTGTGATGACAGGATCTCCATGCAAGAGAGACGCAAAGAGATCATGCTCGGACTGAAGCGACTGC
CGGACTTGATTAAGGAAGTGCTGAGCATGGATGATGAAATCCAGAAGCTGGCGACGGAGCTTTACCACCA
GAAGTCGGTCCTGATAATGGGGCGGGGCTACCATTATGCTACATGCCTTGAAGGGGCTCTGAAAATCAAG
GAGATTACTTATATGCATTCGGAAGGCATCCTTGCTGGTGAGCTCAAGCACGGCCCTCTGGCCTTGGTGG
ACAAGTTGATGCCTGTCATCATGATCATCATGCGAGACCACACTTATGCCAAGTGCCAGAACGCTCTTCA
GCAGGTGGTTGCACGGCAGGGGCGTCCAGTCGTGATCTGTGATAAGGAGGATACTGAGACCATTAAGAAT
ACAAAAAGGACAATCAAGGTGCCCCACTCAGTGGACTGCTTGCAGGGCATTCTCAGTGTGATTCCCCTGC
AGCTGCTGGCTTTCCACCTGGCTGTGCTGAGAGGCTACGATGTTGATTTTCCACGGAATCTTGCCAAATC
TGTAACAGTAGAGTAA

Translation (681 aa):
MCGIFAYLNYHVPRTRREILETLIKGLQRLEYRGYDSAGVGLDGGNDKDWEANACKIQLIKKKGKVKALD
EEVHKQQDMDLDIEFDVHLGIAHTRWATHGEPNPVNSHPQRSDKNNEFIVIHNGIITNYKDLKKFLESKG
YDFESETDTETIAKLVKYMYDNWESQDVSFTTLVERVIQQLEGAFALVFKSVHFPGQAVGTRRGSPLLIG
VRSEHKLSTDHIPILYRTGKDKKGSCGLSRVDSTTCLFPVEEKAVEYYFASDASAVIEHTNRVIFLEDDD
VAAVVDGRLSIHRIKRTAGDHPGRAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYT
VNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFI
SQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFAL
MMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIK
EITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETIKN
TKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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