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Report for CCDS39570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39570.1 Public Mus musculus 6 Slc6a6 23 108 98 CCDS HistoryNCBI Gene:21366Re-query CCDS DB by CCDS ID:39570.1Re-query CCDS DB by GeneID:21366See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032185.8 ENSMUSP00000032185.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032185.8Link to Ensembl Protein Viewer:ENSMUSP00000032185.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032185Re-query CCDS DB by Protein ID:ENSMUSP00000032185
Original member NCBI NM_009320.4 NP_033346.2 Updated not alive Link to Nucleotide Sequence:NM_009320.4Link to Protein Sequence:NP_033346.2Re-query CCDS DB by Nucleotide ID:NM_009320Re-query CCDS DB by Protein ID:NP_033346
Current member NCBI NM_009320.5 NP_033346.2 Accepted alive Link to Nucleotide Sequence:NM_009320.5Link to Protein Sequence:NP_033346.2Re-query CCDS DB by Nucleotide ID:NM_009320Re-query CCDS DB by Protein ID:NP_033346Link to BLAST:NP_033346.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033346.2 621 O35316 621 100% 0 0

Chromosomal Locations for CCDS 39570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 91723293 91723521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91724842 91724976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91726012 91726246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91735091 91735223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91739877 91740011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91740949 91741052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91741178 91741302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91744917 91745029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91748333 91748470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91749727 91749829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91750273 91750373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91752287 91752457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91754914 91755057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGGCCACGAAGGAGAAGCTGCAATGTCTGAAAGACTTCCACAAAGACATCCTGAAGCCTTCTCCAGGGA
AGAGCCCAGGCACACGGCCTGAAGATGAGGCGGACGGGAAGCCCCCTCAGAGGGAGAAGTGGTCCAGCAA
GATCGACTTTGTGCTGTCTGTGGCCGGAGGCTTCGTGGGTTTGGGCAACGTCTGGCGTTTCCCGTACCTC
TGCTACAAAAATGGTGGAGGTGCGTTCCTCATACCGTATTTTATTTTCCTGTTTGGGAGCGGCCTGCCTG
TGTTTTTCTTGGAGGTCATCATAGGCCAGTACACATCAGAAGGGGGCATCACCTGCTGGGAGAAGATCTG
TCCTTTGTTCTCTGGCATTGGCTACGCATCCATCGTCATTGTGTCCCTCCTGAACGTGTACTACATCGTC
ATCCTGGCCTGGGCCACATACTACCTATTCCACTCTTTCCAGAAGGATCTTCCCTGGGCCCACTGCAACC
ATAGCTGGAACACACCACAGTGCATGGAGGACACCCTGCGTAGGAACGAGAGTCACTGGGTCTCCCTTAG
CACTGCCAACTTCACCTCACCCGTCATCGAGTTCTGGGAGCGCAATGTGCTCAGCCTGTCCTCCGGAATC
GACAACCCAGGCAGTCTGAAATGGGACCTCGCGCTCTGCCTCCTCTTAGTCTGGCTCGTCTGTTTTTTCT
GCATCTGGAAGGGTGTTCGATCCACAGGCAAGGTTGTCTACTTCACCGCTACTTTCCCGTTTGCCATGCT
TCTGGTGCTGCTGGTCCGTGGACTGACCCTGCCAGGTGCTGGTGAAGGCATCAAATTCTACCTGTACCCT
GACATCAGCCGCCTTGGGGACCCACAGGTGTGGATCGACGCTGGAACTCAGATATTCTTTTCCTACGCAA
TCTGCCTGGGGGCCATGACCTCACTGGGAAGCTATAACAAGTACAAGTATAACTCGTACAGGGACTGTAT
GCTGCTGGGATGCCTGAACAGTGGTACCAGTTTTGTGTCTGGCTTCGCAATTTTTTCCATCCTGGGCTTC
ATGGCACAAGAGCAAGGGGTGGACATTGCTGATGTGGCTGAGTCAGGTCCTGGCTTGGCCTTCATTGCCT
ACCCAAAAGCTGTAACCATGATGCCGCTGCCCACCTTTTGGTCTATTCTGTTTTTCATTATGCTCCTCTT
GCTTGGACTGGACAGCCAGTTTGTTGAAGTCGAAGGACAGATCACATCCTTGGTTGATCTTTACCCGTCC
TTCCTAAGGAAGGGTTATCGTCGGGAAATCTTCATAGCCATCTTGTGTAGCATCAGCTACCTGCTGGGGC
TGACGATGGTGACGGAGGGTGGCATGTATGTGTTTCAACTCTTTGACTACTATGCAGCTAGTGGTGTATG
CCTTTTGTGGGTTGCATTCTTTGAATGTTTTGTTATTGCCTGGATATATGGCGGTGATAACTTATATGAC
GGTATTGAGGACATGATTGGCTATCGGCCTGGGCCCTGGATGAAGTACAGCTGGGCTGTCATCACTCCAG
CTCTTTGTGTTGGATGTTTCGTCTTCTCGCTTGTCAAGTATGTACCCCTGACCTACAACAAAGTGTACCG
GTACCCGGATTGGGCAATTGGGCTGGGCTGGGGCCTGGCCCTTTCCTCCATGCTGTGTATCCCCTTGGTC
ATTGTCATCCTCCTCTGCCGGACGGAGGGACCGCTCCGCGTGAGAATCAAATACCTGATAACCCCCAGGG
AGCCCAACCGCTGGGCTGTGGAGCGTGAAGGGGCCACACCCTTTCACTCCCGAGTAACCCTCATGAACGG
CGCACTCATGAAACCCAGTCACGTCATTGTGGAGACCATGATGTGA

Translation (621 aa):
MATKEKLQCLKDFHKDILKPSPGKSPGTRPEDEADGKPPQREKWSSKIDFVLSVAGGFVGLGNVWRFPYL
CYKNGGGAFLIPYFIFLFGSGLPVFFLEVIIGQYTSEGGITCWEKICPLFSGIGYASIVIVSLLNVYYIV
ILAWATYYLFHSFQKDLPWAHCNHSWNTPQCMEDTLRRNESHWVSLSTANFTSPVIEFWERNVLSLSSGI
DNPGSLKWDLALCLLLVWLVCFFCIWKGVRSTGKVVYFTATFPFAMLLVLLVRGLTLPGAGEGIKFYLYP
DISRLGDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNSYRDCMLLGCLNSGTSFVSGFAIFSILGF
MAQEQGVDIADVAESGPGLAFIAYPKAVTMMPLPTFWSILFFIMLLLLGLDSQFVEVEGQITSLVDLYPS
FLRKGYRREIFIAILCSISYLLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECFVIAWIYGGDNLYD
GIEDMIGYRPGPWMKYSWAVITPALCVGCFVFSLVKYVPLTYNKVYRYPDWAIGLGWGLALSSMLCIPLV
IVILLCRTEGPLRVRIKYLITPREPNRWAVEREGATPFHSRVTLMNGALMKPSHVIVETMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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