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Report for CCDS39972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39972.1 Public Mus musculus 7 Atp10a 23 108 98 CCDS HistoryNCBI Gene:11982Re-query CCDS DB by CCDS ID:39972.1Re-query CCDS DB by GeneID:11982See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168747.2 ENSMUSP00000129811.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168747.2Link to Ensembl Protein Viewer:ENSMUSP00000129811.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168747Re-query CCDS DB by Protein ID:ENSMUSP00000129811
Original member Current member NCBI NM_009728.2 NP_033858.2 Accepted alive Link to Nucleotide Sequence:NM_009728.2Link to Protein Sequence:NP_033858.2Re-query CCDS DB by Nucleotide ID:NM_009728Re-query CCDS DB by Protein ID:NP_033858Link to BLAST:NP_033858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033858.2 1508 O54827 1508 100% 0 0

Chromosomal Locations for CCDS 39972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 58658455 58658915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58740192 58740396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58773955 58774040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58784732 58784838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58785226 58785357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58786455 58786585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58788194 58788446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58790984 58791201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58794470 58794664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58797300 58797900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58803464 58803567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58803669 58803795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58807375 58807559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58813526 58813850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58816157 58816233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58819610 58819735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58824300 58824500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58827073 58827153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58827246 58827350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58827775 58827962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 58828119 58828737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4527 nt):
ATGGAGCGGGAGCTCCCGGCGGCCGAAGAGTCCGCATCCTCGGGATGGCGGCGGCCGCGAAGAAGGCGCT
GGGAGGGCAGGACGCGCACGGTGCGCTCCAACCTGCTACCGCCTCTGGGCACCGAGGACTCCACGATCGG
AGCCCCCAAGGGCGAGCGGCTGCTGATGCGCGGCTGCATCCAGCACCTGGCCGACAACCGCCTCAAGACC
ACCAAGTACACGCTGCTGTCCTTCTTGCCCAAGAATCTCTTCGAGCAGTTCCACCGCCTAGCCAATGTGT
ACTTCGTCTTCATCGCGCTGCTCAACTTTGTGCCGGCTGTGAACGCCTTCCAGCCGGGCCTGGCACTGGC
GCCTGTGCTCTTCATTCTGGCGGTCACAGCCATCAAAGACCTGTGGGAGGACTACAGCCGACACCGCTCG
GACCATGAAATCAACCACCTGGGCTGCCTTGTCTTCAGCAGGGAAGAAAAGAAGTATGTGAATCGATACT
GGAAAGAAATCCGAGTGGGCGACTTTGTCCGTCTTTGCTGCAATGAAATCATACCTGCGGACATTTTGCT
GCTGTCATCCAGTGACCCTGACGGGTTGTGCCACATCGAGACTGCTAACCTGGATGGAGAGACCAACCTG
AAGCGGCGCCAAGTGGTCCGTGGCTTCTCGGAGCTTGTTTCTGAATTCAACCCTCTGACGTTCACCAGTG
TAATCGAGTGTGAGAAGCCAAACAATGACCTGAGTAGGTTTCGTGGCTACATCATGCACAGCAATGGGGA
GAAGGCTGGGCTGCATAAGGAAAACTTGCTGCTTCGTGGGTGCACCATCAGAAACACAGAGGCTGTGGCT
GGAATTGTCATCTACGCAGGACATGAAACCAAAGCCCTGCTGAACAATAGTGGGCCCCGCTACAAGCGCA
GCCAGCTTGAAAGGCAGATGAACTGCGATGTCCTCTGGTGTGTCCTTCTCCTCGTTTGTATATCTCTATT
TTCAGCGGTTGGGCATGGATTGTGGGTTCGGCGCTATCAAGAGAAAAAAGCACTATTTGATGTTCCCGAG
TCTGATGGCAGCTCTTTATCCCCAGCCACAGCTGCAGTTTACTCATTTTTTACAATGATAATAGTTCTGC
AGGTTTTGATTCCAATTTCCTTATATGTTTCCATTGAAATTGTTAAAGTGTGCCAAGTATACTTCATTAA
CCAAGATATAGAGCTCTATGATGAAGAGACAGATTCACAGCTGCAGTGCCGAGCTCTGAACATAACAGAA
GACTTAGGGCAGATAAAATACATCTTCTCGGACAAAACCGGCACATTAACTGAGAACAAGATGGTCTTTC
GAAGATGCACTGTGTCCGGCATAGAATATTCTCACGATGCCAATGCTCAGCGACTGGCCAGGTATCAAGA
GGCAGACTCAGAAGAGGAGGAAGTGGTGTCCAAGGTGGGCACAATATCCCACCGTGGCAGCACTGGGAGC
CATCAGAGCATCTGGATGACTCATAAGACCCAAAGTATCAAGTCCCACCGGCGCACAGGCAGTCGAGCTG
AGGCAAAGAGAGCCAGCATGCTGTCTAAGCACACTGCCTTCAGCAGCCCCATGGAGAAAGACATTACACC
TGACCCCAAGCTGTTGGAGAAGGTGAGTGAGTGTGACCGATTCCTCGCCATTGCAAGGCACCAGGAACAC
CCTCTGGCCCATCTCTCACCCGAGCTGTCTGATGTTTTTGATTTCTTCATCGCACTCACCATCTGCAATA
CAGTAGTTGTCACCTCTCCAGACCAACCACGACAAAAGGTGAGGGTGAGGTTTGAGCTGAAGTCCCCAGT
AAAGACCATAGAAGATTTCCTTCGGAGGTTCACGCCCAGCCGCCTGGCTTCTGGCTGCAGCAGTATCGGG
AACCTGAGCACCAGTAAATCCAGCCACAAATCTGGATCAGCTTTTCTGCCCAGCCTGTCTCAGGACAGCA
TGCTTCTTGGGCTGGAGGAGAAGCTGGGTCAAACAGCACCGTCCATTGCCAGCAATGGCTATGCCAGCCA
GGCAGGCCAGGAGGAAAGCTGGGCCTCAGAGTGTACTACAGACCAGAAGTGTCCAGGGGAGCAGAGGGAG
CAGCAGGAGGGGGAGCTGCGATATGAGGCTGAGAGCCCAGATGAGGCTGCACTGGTGTATGCAGCCAGAG
CCTATAACTGTGCCCTGGTGGACCGGCTTCACGACCAGGTGTCTGTGGAGTTGCCACACCTAGGCAGGCT
CACCTTCGAGCTGCTGCACACACTTGGCTTCGACTCCATCCGCAAGAGGATGTCAGTGGTGATCCGCCAC
CCGCTGACTGACGAGATCAATGTATACACCAAGGGGGCCGATTCGGTGGTCATGGATCTTCTGCTGCCCT
GTTCCTCAGATGACGCCAGAGGAAGGCACCAGAAAAAGATCCGGAGTAAAACACAGAATTACCTCAATCT
TTATGCAGTAGAAGGCCTGCGCACCCTGTGCATTGCCAAGAGGGTTCTGAGCAAAGAAGAGTATGCCTGC
TGGTTGCAGAGCCACATAGAAGCCGAGGCGTCTGTGGAGAGCCGTGAGGAGCTCCTCTTCCAGTCTGCCG
TTCGCCTGGAGACGAACTTGCACCTGCTGGGTGCCACGGGGATAGAAGACCGCCTTCAGGAAGGAGTACC
TGAAACCATTGCCAAATTACGACAAGCTGGCCTGCAGATTTGGGTTCTCACAGGTGACAAACAGGAAACA
GCCATTAACATTGCATATGCCTGCAAACTGCTGGATCATGGTGAAGAGGTCATCACACTGAATGCTGACT
CTCAGGAAGCATGTGCAGCCCTGCTGGACCAGTGCCTCAGTTATGTGCAATCCAGAAACCCTAGAAGTAC
CCTTCAGAACTCTGAAAGCAACTTGAGTGTGGGGTTCTCTTTCAACCCAGTCTCCACATCCACTGACGCC
AGCCCCAGCCCAAGCCTTGTGATTGATGGAAGAAGTCTGGCCTATGCCCTCGAGAAAAGCCTGGAGGACA
AATTTCTTTTCCTTGCCAAGCAGTGTCGCTCAGTCCTCTGCTGCCGATCGACCCCTTTGCAAAAGAGCAT
GGTGGTGAAGCTTGTCAGAAGCAAGCTCAAGGCCATGACCTTGGCCATAGGTGATGGGGCCAATGATGTC
AGCATGATCCAGGTGGCAGATGTAGGTGTTGGGATCTCAGGCCAGGAGGGCATGCAGGCTGTGATGGCAA
GTGACTTTGCAGTGCCAAGATTCCGATACCTGGAGAGACTTTTGATCGTCCATGGACACTGGTGCTACTC
CAGACTGGCCAATATGGTGCTGTATTTCTTCTATAAAAACACAATGTTTGTGGGTCTCTTGTTTTGGTTC
CAGTTTTACTGTGGCTTTTCTGCATCTGCCATGATTGATCAGTGGTATCTGATTTTCTTTAATCTGCTCT
TCTCATCACTTCCCCAGCTGGTGACTGGGGTGCTGGATAAAGATGTTCCAGCTGACATGCTGCTGAGAGA
GCCACAGCTTTACAAGAGTGGCCAAAACATGGAGGAATACAGACCACGAGCATTCTGGTTAAACATGGTG
GATGCTGCCTTTCAAAGCCTGGTATGCTTTTTCATTCCCTACCTGGCCTACTATGACTCCGATGTGGATG
TCTTTACCTGGGGGACCCCTGTCACAGCAATAGCACTGTTCACCTTCCTGCTGCACCTGGGTATTGAAAC
CAAAACCTGGACCTGGCTCAACTGGTTAGCCTGTGGCTTCAGTACCTTTTTGTTTTTCTCCGTGGCTCTG
ATTTACAACACTTCCTGTGCCACATGCTACCCTCCATCTAACCCTTACTGGACCATGCAGACATTACTGG
GTGACCCTCTGTTCTACTTGACTTGTCTCATCGCACCTATTGCTGCATTGTTGCCCAGATTGTTTTTCAA
AGCCCTCCAGGGGAGTCTTTTCCCCACCCAACTCCAGCTAGGACGCCAGTTGGCCAAGAAACCCCTCAAC
AAATTCAGTGATCCCAAAGAGACTTTTGCTCAGGGACAGCCACCTGGACACTCAGAAACCGAGCTTTCAG
AAAGGAAGACCATGGGACCTTTTGAGACTCTCCCTAGAGACTGTGCCTCTCAAGCTTCCCAGTTCACACA
GCAGCTGACCTGTTCCCCAGAAGCCAGCGGGGAACCCAGTGCAGTGGATACAAACATGCCATTAAGAGAG
AACACCTTGCTGGAAGGACTTGGCTCTCAGGCCTCAGGGTCCTCCATGCCCAGAGGGGCTATTTCAGAAG
TATGTCCTGGGGATTCTAAGAGACAATCCACCAGTGCTAGTCAGACTGCCCGTTTGTCGTCACTCTTCCA
TCTGCCCAGCTTTGGCTCCCTAAATTGGATCTCCTCGCTGTCACTGGCCAGTGGGCTGGGAAGTGTCTTG
CAATTGTCTGGAAGTAGTTTACAGATGGATAAGCAGGATGGTGAGTTTCTATCCAACCCACCACAGCCAG
AGCAGGACCTGCACAGCTTCCAGGGACAAGTCACGGGCTACTTATAG

Translation (1508 aa):
MERELPAAEESASSGWRRPRRRRWEGRTRTVRSNLLPPLGTEDSTIGAPKGERLLMRGCIQHLADNRLKT
TKYTLLSFLPKNLFEQFHRLANVYFVFIALLNFVPAVNAFQPGLALAPVLFILAVTAIKDLWEDYSRHRS
DHEINHLGCLVFSREEKKYVNRYWKEIRVGDFVRLCCNEIIPADILLLSSSDPDGLCHIETANLDGETNL
KRRQVVRGFSELVSEFNPLTFTSVIECEKPNNDLSRFRGYIMHSNGEKAGLHKENLLLRGCTIRNTEAVA
GIVIYAGHETKALLNNSGPRYKRSQLERQMNCDVLWCVLLLVCISLFSAVGHGLWVRRYQEKKALFDVPE
SDGSSLSPATAAVYSFFTMIIVLQVLIPISLYVSIEIVKVCQVYFINQDIELYDEETDSQLQCRALNITE
DLGQIKYIFSDKTGTLTENKMVFRRCTVSGIEYSHDANAQRLARYQEADSEEEEVVSKVGTISHRGSTGS
HQSIWMTHKTQSIKSHRRTGSRAEAKRASMLSKHTAFSSPMEKDITPDPKLLEKVSECDRFLAIARHQEH
PLAHLSPELSDVFDFFIALTICNTVVVTSPDQPRQKVRVRFELKSPVKTIEDFLRRFTPSRLASGCSSIG
NLSTSKSSHKSGSAFLPSLSQDSMLLGLEEKLGQTAPSIASNGYASQAGQEESWASECTTDQKCPGEQRE
QQEGELRYEAESPDEAALVYAARAYNCALVDRLHDQVSVELPHLGRLTFELLHTLGFDSIRKRMSVVIRH
PLTDEINVYTKGADSVVMDLLLPCSSDDARGRHQKKIRSKTQNYLNLYAVEGLRTLCIAKRVLSKEEYAC
WLQSHIEAEASVESREELLFQSAVRLETNLHLLGATGIEDRLQEGVPETIAKLRQAGLQIWVLTGDKQET
AINIAYACKLLDHGEEVITLNADSQEACAALLDQCLSYVQSRNPRSTLQNSESNLSVGFSFNPVSTSTDA
SPSPSLVIDGRSLAYALEKSLEDKFLFLAKQCRSVLCCRSTPLQKSMVVKLVRSKLKAMTLAIGDGANDV
SMIQVADVGVGISGQEGMQAVMASDFAVPRFRYLERLLIVHGHWCYSRLANMVLYFFYKNTMFVGLLFWF
QFYCGFSASAMIDQWYLIFFNLLFSSLPQLVTGVLDKDVPADMLLREPQLYKSGQNMEEYRPRAFWLNMV
DAAFQSLVCFFIPYLAYYDSDVDVFTWGTPVTAIALFTFLLHLGIETKTWTWLNWLACGFSTFLFFSVAL
IYNTSCATCYPPSNPYWTMQTLLGDPLFYLTCLIAPIAALLPRLFFKALQGSLFPTQLQLGRQLAKKPLN
KFSDPKETFAQGQPPGHSETELSERKTMGPFETLPRDCASQASQFTQQLTCSPEASGEPSAVDTNMPLRE
NTLLEGLGSQASGSSMPRGAISEVCPGDSKRQSTSASQTARLSSLFHLPSFGSLNWISSLSLASGLGSVL
QLSGSSLQMDKQDGEFLSNPPQPEQDLHSFQGQVTGYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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