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Report for CCDS40327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40327.1 Public Mus musculus 8 Slc7a2 23 108 98 CCDS HistoryNCBI Gene:11988Re-query CCDS DB by CCDS ID:40327.1Re-query CCDS DB by GeneID:11988See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098816.9 ENSMUSP00000096414.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098816.9Link to Ensembl Protein Viewer:ENSMUSP00000096414.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098816Re-query CCDS DB by Protein ID:ENSMUSP00000096414
Original member Current member EBI ENSMUST00000117077.7 ENSMUSP00000113729.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117077.7Link to Ensembl Protein Viewer:ENSMUSP00000113729.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117077Re-query CCDS DB by Protein ID:ENSMUSP00000113729
Original member Current member NCBI NM_001044740.2 NP_001038205.1 Accepted alive Link to Nucleotide Sequence:NM_001044740.2Link to Protein Sequence:NP_001038205.1Re-query CCDS DB by Nucleotide ID:NM_001044740Re-query CCDS DB by Protein ID:NP_001038205Link to BLAST:NP_001038205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038205.1 658 P18581-2 658 100% 0 0

Chromosomal Locations for CCDS 40327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 40898953 40899328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40900056 40900211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40902499 40902664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40904446 40904579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40905505 40905727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40908056 40908195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40910995 40911097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40912480 40912685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40913963 40914129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40914920 40915028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40916338 40916534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGATTCCCTGCAGAGCAGTGCTGACTTTCGCGCGATGTCTGATCCGGAGAAAAATTGTCACACTGGACA
GC
CTTGAAGATTCCAAACTCTGCCGCTGCTTAACCACCGTGGACCTCATCGCTTTGGGGGTTGGAAGCAC
T
CTGGGCGCTGGGGTCTACGTCCTGGCTGGGGAAGTCGCCAAAGCCGATTCTGGCCCGAGTATCGTGGTG
TCT
TTCCTCATCGCTGCCCTGGCCTCGGTTATGGCCGGCCTTTGCTATGCTGAATTTGGGGCCCGAGTAC
CC
AAGACTGGATCTGCGTATCTATACACTTACGTCACGGTCGGAGAGCTGTGGGCCTTCATCACTGGCTG
G
AATCTCATCCTGTCATATGTCATAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGCACCTTCGACGAA
CTT
CTTAATAAACAGATTGGCCAGTTTTTCAAAACGTACTTCAAAATGAATTACACTGGTCTGGCAGAGT
AT
CCAGACTTCTTTGCCGTGTGCCTTGTATTACTCCTGGCAGGTCTTTTATCTTTTGGAGTAAAAGAGTC
T
GCTTGGGTGAATAAATTTTTTACAGCTATTAATATCCTGGTCCTTCTCTTTGTCATGGTGGCTGGGTTT
GTG
AAAGGAAATGTGGCTAACTGGAAGATCAGTGAAGAGTTTCTCAAAAATATATCAGCAAGTGCCAGAG
AA
CCACCTTCTGAGAACGGAACAAGCATCTACGGGGCTGGCGGCTTTATGCCCTATGGCTTTACAGGGAC
G
TTGGCTGGTGCTGCAACGTGCTTTTATGCCTTTGTGGGCTTTGACTGCATTGCAACAACGGGTGAAGAG
GTT
CGGAATCCGCAAAAGGCGATCCCCATCGGAATAGTGACGTCCTTACTTGTCTGCTTTATGGCTTACT
TT
GGGGTTTCTGCAGCTTTAACGCTTATGATGCCTTACTACCTCCTGGATGAGAAAAGTCCACTCCCGGT
C
GCGTTTGAGTATGTCAGATGGAGCCCCGCCAAATATGTTGTCTCGGCAGGCTCCCTCTGCGCCTTATCA
ACA
AGTCTTCTTGGATCCATTTTCCCAATGCCTCGTGTAATCTATGCTATGGCGGAGGATGGGTTGCTTT
TC
AAATGTCTAGCTCAAATCAATTCCAAAACGAAGACACCAGTAATTGCTACTTTGTCGTCGGGTGCAGT
G
GCAGCTGTGATGGCCTTTCTTTTTGACCTGAAGGCCCTCGTGGACATGATGTCTATTGGCACCCTCATG
GCC
TACTCTCTGGTGGCAGCCTGTGTGCTTATTCTCAGGTACCAACCTGGCTTGTGTTATGACCAGCCCA
AA
TACACCCCTGAGAAAGAAACTCTGGAATCATGTACCAATGCGACTTTGAAGAGCGAGTCCCAGGTCAC
C
ATGCTGCAAGGACAGGGTTTCAGCCTACGAACCCTCTTCAGCCCCTCTGCCCTGCCCACACGACAGTCG
GCT
TCCCTTGTGAGCTTTCTGGTGGGATTCCTGGCTTTCCTCATCCTGGGCTTGAGTATTCTAACCACGT
AT
GGCGTCCAGGCCATTGCCAGACTGGAAGCCTGGAGCCTGGCTCTTCTCGCCCTGTTCCTTGTCCTCTG
C
GTTGCCGTCATTCTGACCATTTGGAGGCAGCCACAGAATCAGCAAAAAGTAGCCTTCATGGTCCCGTTC
TTA
CCGTTTCTGCCGGCCTTCAGCATCCTGGTCAACATTTACTTGATGGTCCAGTTAAGTGCGGACACTT
GG
ATCAGATTCAGCATCTGGATGGCGCTTGGCTTTCTGATCTACTTCGCCTATGGCATTAGACACAGCTT
G
GAGGGTAACCCCAGGGATGAAGAAGACGATGAGGATGCCTTTTCAGACAACATCAATGCAGCAACAGAA
GAA
AAGTCCGCCATGCAAGCAAATGACCATCACCAAAGAAACCTCAGCTTACCTTTCATACTTCATGAAA
AG
ACAAGTGAATGTTGA


Translation (658 aa):
MIPCRAVLTFARCLIRRKIVTLDSLEDSKLCRCLTTVDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVV
S
FLIAALASVMAGLCYAEFGARVPKTGSAYLYTYVTVGELWAFITGWNLILSYVI
GTSSVARAWSGTFDE
L
LNKQIGQFFKTYFKMNYTGLAEYPDFFAVCLVLLLA
GLLSFGVKESAWVNKFFTAINILVLLFVMVAGF
V
KGNVANWKISEEFLKNISASA
REPPSENGTSIYGAGGFMPYGFTGTLAGAATCFYAFVGFDCIATTGEE
V
RNPQKAIPIGIVTSLLVCFMAYFGVSAALTLMMPYYLLDEKSPLPVAFEYVRWSPAKYVVSAGSLCALS
T
SLLGSIFPMPRVIYAMAEDGLLFKCLAQINSKTKTPVIATLSSGAVAAVMAFLFDLKALVDMMSIGTLM
A
YSLVAACVLIL
RYQPGLCYDQPKYTPEKETLESCTNATLKSESQVTMLQGQGFSLRTLFSPSALPTRQS
A
SLVSFLVGFL
AFLILGLSILTTYGVQAIARLEAWSLALLALFLVLCVAVILTIWRQPQNQQKVAFMVPF
L
PFLPAFSILVNIYLMVQLSADTWIRFSIWMAL
GFLIYFAYGIRHSLEGNPRDEEDDEDAFSDNINAATE
E
KSAMQANDHHQRNLSLPFILHEKTSEC




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser