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Report for CCDS40386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40386.1 Public Mus musculus 8 Slc27a1 23 108 98 CCDS HistoryNCBI Gene:26457Re-query CCDS DB by CCDS ID:40386.1Re-query CCDS DB by GeneID:26457See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034267.4 ENSMUSP00000034267.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034267.4Link to Ensembl Protein Viewer:ENSMUSP00000034267.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034267Re-query CCDS DB by Protein ID:ENSMUSP00000034267
Original member Current member EBI ENSMUST00000212889.1 ENSMUSP00000148768.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212889.1Link to Ensembl Protein Viewer:ENSMUSP00000148768.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212889Re-query CCDS DB by Protein ID:ENSMUSP00000148768
Original member NCBI NM_001357180.1 NP_001344109.1 Updated not alive Link to Nucleotide Sequence:NM_001357180.1Link to Protein Sequence:NP_001344109.1Re-query CCDS DB by Nucleotide ID:NM_001357180Re-query CCDS DB by Protein ID:NP_001344109
Current member NCBI NM_001357180.2 NP_001344109.1 Accepted alive Link to Nucleotide Sequence:NM_001357180.2Link to Protein Sequence:NP_001344109.1Re-query CCDS DB by Nucleotide ID:NM_001357180Re-query CCDS DB by Protein ID:NP_001344109Link to BLAST:NP_001344109.1
Original member NCBI NM_001357181.1 NP_001344110.1 Updated not alive Link to Nucleotide Sequence:NM_001357181.1Link to Protein Sequence:NP_001344110.1Re-query CCDS DB by Nucleotide ID:NM_001357181Re-query CCDS DB by Protein ID:NP_001344110
Current member NCBI NM_001357181.2 NP_001344110.1 Accepted alive Link to Nucleotide Sequence:NM_001357181.2Link to Protein Sequence:NP_001344110.1Re-query CCDS DB by Nucleotide ID:NM_001357181Re-query CCDS DB by Protein ID:NP_001344110Link to BLAST:NP_001344110.1
Original member NCBI NM_001357182.1 NP_001344111.1 Updated not alive Link to Nucleotide Sequence:NM_001357182.1Link to Protein Sequence:NP_001344111.1Re-query CCDS DB by Nucleotide ID:NM_001357182Re-query CCDS DB by Protein ID:NP_001344111
Current member NCBI NM_001357182.2 NP_001344111.1 Accepted alive Link to Nucleotide Sequence:NM_001357182.2Link to Protein Sequence:NP_001344111.1Re-query CCDS DB by Nucleotide ID:NM_001357182Re-query CCDS DB by Protein ID:NP_001344111Link to BLAST:NP_001344111.1
Original member NCBI NM_011977.4 NP_036107.1 Updated not alive Link to Nucleotide Sequence:NM_011977.4Link to Protein Sequence:NP_036107.1Re-query CCDS DB by Nucleotide ID:NM_011977Re-query CCDS DB by Protein ID:NP_036107
Current member NCBI NM_011977.5 NP_036107.1 Accepted alive Link to Nucleotide Sequence:NM_011977.5Link to Protein Sequence:NP_036107.1Re-query CCDS DB by Nucleotide ID:NM_011977Re-query CCDS DB by Protein ID:NP_036107Link to BLAST:NP_036107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344109.1 646 Q60714 646 100% 0 0
NP_001344110.1 646 Q60714 646 100% 0 0
NP_001344111.1 646 Q60714 646 100% 0 0
NP_036107.1 646 Q60714 646 100% 0 0

Chromosomal Locations for CCDS 40386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71570722 71570888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71579404 71579798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71579907 71580068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71580145 71580214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71580610 71580701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71580767 71580876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71584118 71584327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71584420 71584546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71584633 71584770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71584842 71585006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71585346 71585492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71585902 71586059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGCGGGCTCCTGGAGCAGGAACAGCCTCTGTGGCCTCACTGGCGCTGCTTTGGTTTCTGGGACTTCCGT
GGACCTGGAGCGCGGCGGCGGCGTTCTGTGTGTACGTGGGTGGCGGCGGCTGGCGCTTTCTGCGTATCGT
CTGCAAGACGGCGAGGCGAGACCTCTTTGGCCTCTCTGTTCTGATTCGTGTTCGGCTAGAGCTGCGACGA
CACCGGCGAGCAGGAGACACGATCCCGTGCATCTTCCAGGCTGTGGCCCGGCGACAACCAGAGCGCCTGG
CACTGGTGGACGCCAGTAGTGGTATATGCTGGACCTTCGCACAGCTGGACACCTACTCCAATGCTGTAGC
CAACCTGTTCCGCCAGCTGGGCTTTGCACCAGGCGATGTGGTGGCTGTGTTCCTGGAGGGCCGGCCGGAG
TTCGTGGGACTGTGGCTGGGCCTGGCCAAGGCCGGTGTGGTGGCTGCTCTTCTCAATGTCAACCTGAGGC
GGGAGCCCCTGGCCTTCTGCCTGGGCACATCAGCTGCCAAGGCCCTCATTTATGGCGGGGAGATGGCAGC
GGCGGTGGCGGAGGTGAGCGAGCAGCTGGGGAAGAGCCTCCTCAAGTTCTGCTCTGGAGATCTGGGGCCT
GAGAGCATCCTGCCTGACACGCAGCTCCTGGACCCCATGCTTGCTGAGGCGCCCACCACACCCCTGGCAC
AAGCCCCAGGCAAGGGCATGGATGATCGGCTGTTTTACATCTATACTTCTGGGACCACCGGGCTTCCTAA
GGCTGCCATTGTGGTGCACAGCAGGTACTACCGCATTGCTGCCTTTGGCCACCATTCCTACAGCATGCGT
GCCGCCGATGTGCTCTATGACTGCCTGCCACTCTACCACTCTGCAGGGAACATCATGGGTGTGGGGCAGT
GCGTCATCTACGGGTTGACGGTGGTACTGCGCAAGAAGTTCTCCGCCAGCCGCTTCTGGGATGACTGTGT
CAAGTACAATTGCACGGTAGTGCAGTACATAGGTGAAATCTGCCGCTACCTGCTGAGGCAGCCGGTTCGC
GACGTGGAGCAGCGACACCGCGTGCGCCTGGCCGTGGGTAATGGGCTGCGGCCAGCCATCTGGGAGGAGT
TCACGCAGCGCTTCGGTGTGCCACAGATCGGCGAGTTCTACGGCGCTACCGAGTGCAACTGCAGCATTGC
CAACATGGACGGCAAGGTCGGCTCCTGCGGCTTCAACAGCCGTATCCTCACGCATGTGTACCCCATCCGT
CTGGTCAAGGTCAATGAGGACACGATGGAGCCACTGCGGGACTCCGAGGGCCTCTGCATCCCGTGCCAGC
CCGGGGAACCCGGCCTTCTCGTGGGCCAGATCAACCAGCAGGACCCTCTGCGGCGTTTCGATGGTTATGT
TAGTGACAGTGCCACCAACAAGAAGATTGCCCACAGCGTTTTCCGAAAGGGCGATAGCGCCTACCTCTCA
GGTGACGTGCTAGTGATGGACGAGCTGGGCTACATGTATTTCCGTGACCGCAGCGGGGACACCTTCCGCT
GGCGCGGGGAGAACGTGTCCACCACGGAGGTGGAAGCCGTGCTGAGCCGCCTACTGGGCCAGACGGACGT
GGCTGTGTATGGGGTGGCTGTGCCAGGAGTGGAGGGGAAAGCTGGCATGGCAGCCATCGCAGATCCCCAC
AGCCAGTTGGACCCTAACTCAATGTACCAGGAATTACAGAAGGTTCTTGCATCCTATGCTCGGCCCATCT
TCCTGCGTCTTCTGCCCCAGGTGGATACCACAGGCACCTTCAAGATCCAGAAGACCCGGCTGCAGCGTGA
AGGCTTTGACCCCCGTCAGACCTCAGACAGGCTCTTCTTTCTAGACCTGAAGCAGGGACGCTATGTACCC
CTGGATGAGAGAGTCCATGCCCGCATTTGTGCAGGCGACTTCTCACTCTGA

Translation (646 aa):
MRAPGAGTASVASLALLWFLGLPWTWSAAAAFCVYVGGGGWRFLRIVCKTARRDLFGLSVLIRVRLELRR
HRRAGDTIPCIFQAVARRQPERLALVDASSGICWTFAQLDTYSNAVANLFRQLGFAPGDVVAVFLEGRPE
FVGLWLGLAKAGVVAALLNVNLRREPLAFCLGTSAAKALIYGGEMAAAVAEVSEQLGKSLLKFCSGDLGP
ESILPDTQLLDPMLAEAPTTPLAQAPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMR
AADVLYDCLPLYHSAGNIMGVGQCVIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLRQPVR
DVEQRHRVRLAVGNGLRPAIWEEFTQRFGVPQIGEFYGATECNCSIANMDGKVGSCGFNSRILTHVYPIR
LVKVNEDTMEPLRDSEGLCIPCQPGEPGLLVGQINQQDPLRRFDGYVSDSATNKKIAHSVFRKGDSAYLS
GDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEVEAVLSRLLGQTDVAVYGVAVPGVEGKAGMAAIADPH
SQLDPNSMYQELQKVLASYARPIFLRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQGRYVP
LDERVHARICAGDFSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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