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Report for CCDS40471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40471.1 Public Mus musculus 8 Dhodh 23 108 98 CCDS HistoryNCBI Gene:56749Re-query CCDS DB by CCDS ID:40471.1Re-query CCDS DB by GeneID:56749See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000123605.8 ENSMUSP00000115934.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123605.8Link to Ensembl Protein Viewer:ENSMUSP00000115934.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123605Re-query CCDS DB by Protein ID:ENSMUSP00000115934
Original member Current member NCBI NM_020046.3 NP_064430.1 Accepted alive Link to Nucleotide Sequence:NM_020046.3Link to Protein Sequence:NP_064430.1Re-query CCDS DB by Nucleotide ID:NM_020046Re-query CCDS DB by Protein ID:NP_064430Link to BLAST:NP_064430.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064430.1 395 O35435 395 100% 0 0

Chromosomal Locations for CCDS 40471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 109594077 109594131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109594620 109594779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109594916 109595069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109595647 109595760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109596030 109596217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109601423 109601505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109603303 109603502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109606208 109606420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109608352 109608372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGCGTGGAGACAGCTGAGAAAGCGGGCCCTGGATGCAGCCATCATCCTTGGGGGTGGAGGACTTCTCT
TCACCTCTTACCTGACAGCCACGGGGGACGACCATTTCTACGCCGAGTACCTGATGCCGGCTCTGCAGAG
ACTGCTTGATCCAGAGTCGGCGCACCGGCTAGCTGTTCGAGTCATCTCCCTGGGGCTCCTTCCTCGAGCT
ACGTTTCAGGACTCCAACATGCTGGAAGTGAGAGTCCTGGGCCATAAATTCCGAAATCCAGTAGGGATTG
CTGCAGGATTTGACAAGCACGGGGAAGCTGTGGACGGACTCTATAAGCTGGGCTTTGGTTTTGTTGAGGT
GGGAAGTGTGACTCCCCAGCCTCAGGAAGGAAACCCCAGGCCCCGAGTATTCCGTCTCCCTGAGGACCAA
GCTGTTATTAACAGGTATGGATTCAACAGCCACGGGCTCTCAGCGGTGGAACACAGGCTACGGGCCAGAC
AGCAGAAGCAGACCCAGCTCACCACAGATGGGCTGCCTCTGGGAATAAACCTGGGGAAGAATAAGACTTC
GGTGGATGCTGCTGCAGACTATGTAGAGGGTGTTCGCATCCTGGGCCCCTTGGCCGACTACCTGGTGGTT
AACGTGTCCAGTCCCAACACTGCTGGCCTGAGGAGCCTACAGGGAAAGACTGAGCTGCGCCGCCTGCTGT
CCAAGGTGCTGCAGGAGAGGGACGCCTTGAAGGGACCTCAGAAGCCAGCGGTGCTGGTGAAGATTGCCCC
TGACCTCACGGCCCAGGACAAGGAGGACATTGCCAGCGTGGCCAGAGAGCTGGGCATCGACGGACTGATC
ATCACAAATACCACAGTGAGTCGCCCTGTTGGCCTCCAGGGTGCTCTGCGCTCTGAGACAGGGGGACTGA
GTGGGAAGCCACTCCGAGATCTGTCGACCCAGACGATCCGGGAGATGTACGCCCTCACCCAAGGCACGAT
TCCCATCATCGGGGTTGGTGGTGTGAGCAGCGGACAGGATGCCTTGGAGAAGATCCAGGCAGGGGCCTCC
CTGGTGCAGCTGTACACGGCCCTCACCTTCTTGGGGCCACCAGTCGTGGCCAGGGTCAAGCGTGAGCTGG
AGGCCCTTCTAAAAGAACGGGGTTTTAACACAGTGACAGACGCCATTGGAGTAGATCACCGCAGGTGA

Translation (395 aa):
MAWRQLRKRALDAAIILGGGGLLFTSYLTATGDDHFYAEYLMPALQRLLDPESAHRLAVRVISLGLLPRA
TFQDSNMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLYKLGFGFVEVGSVTPQPQEGNPRPRVFRLPEDQ
AVINRYGFNSHGLSAVEHRLRARQQKQTQLTTDGLPLGINLGKNKTSVDAAADYVEGVRILGPLADYLVV
NVSSPNTAGLRSLQGKTELRRLLSKVLQERDALKGPQKPAVLVKIAPDLTAQDKEDIASVARELGIDGLI
ITNTTVSRPVGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGTIPIIGVGGVSSGQDALEKIQAGAS
LVQLYTALTFLGPPVVARVKRELEALLKERGFNTVTDAIGVDHRR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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