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Report for CCDS40970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40970.1 Public Mus musculus X Hs6st2 23 108 98 CCDS HistoryNCBI Gene:50786Re-query CCDS DB by CCDS ID:40970.1Re-query CCDS DB by GeneID:50786See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088172.11 ENSMUSP00000085497.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088172.11Link to Ensembl Protein Viewer:ENSMUSP00000085497.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088172Re-query CCDS DB by Protein ID:ENSMUSP00000085497
Original member NCBI NM_001077202.2 NP_001070670.1 Updated not alive Link to Nucleotide Sequence:NM_001077202.2Link to Protein Sequence:NP_001070670.1Re-query CCDS DB by Nucleotide ID:NM_001077202Re-query CCDS DB by Protein ID:NP_001070670
Current member NCBI NM_001077202.3 NP_001070670.1 Accepted alive Link to Nucleotide Sequence:NM_001077202.3Link to Protein Sequence:NP_001070670.1Re-query CCDS DB by Nucleotide ID:NM_001077202Re-query CCDS DB by Protein ID:NP_001070670Link to BLAST:NP_001070670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070670.1 652 Q80UW0-3 652 100% 0 0

Chromosomal Locations for CCDS 40970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 51389470 51390361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51428658 51428744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51471374 51471406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51679890 51680408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51681175 51681602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGGCACTGCCTGCGTTTGCAGCCCGGGCGCTCGGGCCGCCACTGCAACCGGAGCAAGGAGCGCCCGCCC
GCACCACCTGTCCCCGCCGGCATTCCAGAGTAGAGGCCGAATTGGCAGCAAGCCGGCCCGGGTCTGTTGC
CGCCTCAGTCCGCGCCGGCCCTCCTAGGGGTGTGTCTCTCGGATTCAACTCCCCGCCGCTCCAGGACAAG
CCCCCAAAGGCATTTTCTTCCTTGGCGGGAGCCTTGCGCGCCCCGCTCTTCGCGCTGCTGCCTCGAGGCC
GCCGCAGGCGGATGCACGACCTCAGGCGACGCTGGGACCTGGGCTCCCTCTGCCGGGCCCTGCTCACTCG
GGGCCTGGCAGCCGTGGGCCACTCGCTCAAGCACGTGCTCAGTGCGATCTTCTCCAAGATTTTCGGTCCC
TTGGCCAGCGTCGGGAACATGGATGAGAAATCTAACAAGCTGCTGCTGGCTTTGGTGATGCTCTTCCTAT
TTGCGGTGATCGTCCTCCAATACGTGTGCCCCGGCACAGAATGCCAGCTCCTCCGCCTGCAGGCGTTCAG
CTCCCCGGTGCCGGATCCGTACCGCTCGGAGGATGAGAGTTCGGCCAGGTTTGTACCCCGCTACAATTTC
AGCCGCGGCGATCTCCTGCGCAAGGTAGACTTCGACATCAAGGGCGATGACCTGATCGTGTTCCTGCACA
TCCAGAAGACTGGGGGCACCACTTTTGGCCGTCACCTGGTGCGCAACATCCAGCTGGAGCAGCCATGTGA
GTGCCGCGTGGGGCAGAAGAAATGCACTTGCCACCGGCCGGGTAAGAGGGAGACCTGGCTCTTCTCCAGG
TTCTCCACCGGCTGGAGCTGCGGGCTGCATGCCGACTGGACCGAGCTCACCAGCTGCGTGCCGGCGGTGG
TGGATGGCAAGCGCGACGCCAGGCTGAGACCTTCCAGGTGGAGGATTTTTCAGATTCTAGATGGAACAAG
TAAGGATAGATGGGGTTCTTCAAACTTCAACTCAGGCGCCAACTCTCCATCCTCCACAAAGCCCCGGAGC
ACATCGAAGAGTGGGAAGAACTTCCATTACATTACCATCCTGAGAGACCCAGTGTCACGGTACTTGAGTG
AATGGAGGCATGTCCAGAGAGGAGCAACTTGGAAAGCATCCCTGCACGTCTGTGATGGAAGGCCCCCAAC
CTCTGAAGAGCTGCCCAGCTGCTACACCGGTGATGACTGGTCTGGATGCCCTCTCAAAGAGTTCATGGAC
TGTCCCTATAATCTGGCCAACAACCGCCAAGTTCGCATGCTATCTGACCTGACTCTAGTGGGATGCTACA
ACCTCTCTGTCATGCCTGAAAAGCAAAGAAACAAAGTCCTTCTGGAAAGTGCCAAATCCAATCTGAAGCA
CATGGCGTTCTTTGGCCTCACTGAGTTTCAGCGCAAGACCCAGTACCTGTTTGAGAAGACCTTCAACATG
AACTTTATCTCGCCGTTTACCCAGTATAATACCACTAGGGCCTCTAGTGTTGAGATCAATGAGGAAATCC
AAAAGCGTATTGAGGGACTGAATTTTCTGGATATGGAGTTGTACAGCTATGCTAAAGACCTCTTTCTGCA
AAGGTATCAGTTCATGAGGCAGAAAGAACATCAGGATGCCAGGCGGAAGCGTCAGGAGCAACGCAAATTT
CTGAAGGGAAGGTTCCTTCAGACCCATTTCCAGAGTCAGAGTCAGGGTCAGAGCCAGAGCCAGAGTCCAG
GTCAGAATCTGAGTCAGAATCCAAATCCTAACCCAAATCAGAACCTGACTCAGAACCTGAGTCACAATCT
GACTCCGAGTTCAAATCCCAATTCGACCCAGAGGGAGAACCGGGGAAGTCAGAAGCAGGGCTCAGGCCAG
GGACAAGGTGATAGCGGCACCAGCAATGGCACCAATGACTACATAGGGAGCGTAGAGACATGGCGCTAA

Translation (652 aa):
MALPAFAARALGPPLQPEQGAPARTTCPRRHSRVEAELAASRPGSVAASVRAGPPRGVSLGFNSPPLQDK
PPKAFSSLAGALRAPLFALLPRGRRRRMHDLRRRWDLGSLCRALLTRGLAAVGHSLKHVLSAIFSKIFGP
LASVGNMDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFSSPVPDPYRSEDESSARFVPRYNF
SRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCECRVGQKKCTCHRPGKRETWLFSR
FSTGWSCGLHADWTELTSCVPAVVDGKRDARLRPSRWRIFQILDGTSKDRWGSSNFNSGANSPSSTKPRS
TSKSGKNFHYITILRDPVSRYLSEWRHVQRGATWKASLHVCDGRPPTSEELPSCYTGDDWSGCPLKEFMD
CPYNLANNRQVRMLSDLTLVGCYNLSVMPEKQRNKVLLESAKSNLKHMAFFGLTEFQRKTQYLFEKTFNM
NFISPFTQYNTTRASSVEINEEIQKRIEGLNFLDMELYSYAKDLFLQRYQFMRQKEHQDARRKRQEQRKF
LKGRFLQTHFQSQSQGQSQSQSPGQNLSQNPNPNPNQNLTQNLSHNLTPSSNPNSTQRENRGSQKQGSGQ
GQGDSGTSNGTNDYIGSVETWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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