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Report for CCDS40996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40996.1 Public Mus musculus X Ids 23 108 98 CCDS HistoryNCBI Gene:15931Re-query CCDS DB by CCDS ID:40996.1Re-query CCDS DB by GeneID:15931See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40996.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101509.8 ENSMUSP00000099046.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101509.8Link to Ensembl Protein Viewer:ENSMUSP00000099046.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101509Re-query CCDS DB by Protein ID:ENSMUSP00000099046
Original member NCBI NM_010498.3 NP_034628.2 Updated not alive Link to Nucleotide Sequence:NM_010498.3Link to Protein Sequence:NP_034628.2Re-query CCDS DB by Nucleotide ID:NM_010498Re-query CCDS DB by Protein ID:NP_034628
Current member NCBI NM_010498.4 NP_034628.2 Accepted alive Link to Nucleotide Sequence:NM_010498.4Link to Protein Sequence:NP_034628.2Re-query CCDS DB by Nucleotide ID:NM_010498Re-query CCDS DB by Protein ID:NP_034628Link to BLAST:NP_034628.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034628.2 552 Q08890 552 100% 0 0

Chromosomal Locations for CCDS 40996.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 70346201 70346673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70350927 70351100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70353144 70353270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70358267 70358437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70359949 70360149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70361043 70361131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70362977 70363154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70363802 70363938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70364795 70364903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGTCGCCGCCGCCGCCGCCGCCTATCTGGCGGCAGCTTAGCTTCAGCTTGTTGCTAGGCTCCTTCTGCA
TCGCCCTGGAGTCCGCAGCGCAAGGCAACTCTGCTACAGATGCTCTGAACATCCTTCTGATCATTGTGGA
TGATCTCCGCCCCTCCCTGGGCTGTTATGGAGACAAGCTAGTGAGGTCCCCGAACATTGACCAGCTGGCA
TCCCATAGCGTTCTCTTTCAGAATGCCTTTGCTCAGCAAGCAGTGTGCGCACCAAGTCGAGTGTCCTTCC
TCACCGGGAGGAGGCCTGACACCACCCGCCTGTATGACTTCAATTCCTACTGGAGGGTACATTCTGGAAA
TTTTTCCACCATCCCCCAATACTTCAAGGAGAATGGCTACGTGACCATGTCGGTTGGGAAAGTCTTTCAC
CCTGGTATATCTTCCAATCACAGTGATGATTATCCATATAGCTGGTCTTTTCCACCTTATCATCCATCCT
CAGAGAAATATGAAAACACTAAGACGTGTAAGGGACAAGATGGAAAACTCCACGCCAATCTGCTTTGTCC
TGTCGATGTGGCAGATGTGCCTGAAGGTACCTTGCCTGACAAACAGAGCACAGAAGAAGCCATCAGGTTG
TTGGAAAAGATGAAGACATCAGCTAGTCCTTTCTTCCTGGCAGTTGGGTACCACAAGCCGCATATCCCCT
TCAGATACCCCAAGGAATTTCAGAAGTTGTATCCCTTGGAAAACATAACCCTGGCTCCTGATCCCCATGT
TCCTGATAGCCTACCACCTGTAGCCTACAACCCCTGGATGGATATCAGGGAGAGGGAAGATGTCCAAGCC
TTAAACATCAGTGTTCCCTATGGACCAATTCCTGAGGATTTTCAGCGGAAAATCCGCCAGAGCTACTTTG
CTTCTGTGTCCTATTTGGATACTCAGGTTGGACATGTTTTGAGTGCTTTGGATGATCTTCGTCTAGCCCA
CAACACAATTATTGCTTTCACATCTGATCACGGATGGGCCCTAGGTGAACACGGAGAATGGGCCAAGTAC
AGCAACTTTGATGTTGCTACCCGTGTGCCCCTGATGCTCTATGTCCCTGGAAGGACGGCCCCACTTCCTG
CGGCAGGCCAGAAGCTCTTTCCATACCGGGACCCCTTTGATCCGGCCTCGGATTGGATGGATGCAGGCAG
GCACACCGAGGACCTCGTAGAACTTGTATCTCTCTTCCCCACGCTCGCTGGACTTGCAGGACTGCCAGTT
CCTCCTCGGTGCCCCATCCCTTCTTTTCATGTTGAGCTTTGCAGAGAAGGCCAGAATCTTCAGAAGCATT
TGCAGCTCCATGACTTGGAAGAGGAGCCAGACTTGTTTGGTAATCCCCGGGAGTTGATCGCCTATAGCCA
GTACCCCCGGCCTGCAGATTTCCCTCAGTGGAATTCTGACAAGCCAAGCTTAAATGATATAAAGGTCATG
GGATATTCTATACGCACTGTAGACTACAGGTACACTGTGTGGGTTGGCTTCGATCCTAGTGAATTTCTGG
CTAACTTTTCTGATATCCATGCCGGGGAACTCTATTTTGTCGATTCTGACCCACTGCAGGATCACAATGT
ATATAATGACTCCCAACATGGAGGTCTTCTCCACTCACTGAGGCCTTGA

Translation (552 aa):
MSPPPPPPIWRQLSFSLLLGSFCIALESAAQGNSATDALNILLIIVDDLRPSLGCYGDKLVRSPNIDQLA
SHSVLFQNAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRVHSGNFSTIPQYFKENGYVTMSVGKVFH
PGISSNHSDDYPYSWSFPPYHPSSEKYENTKTCKGQDGKLHANLLCPVDVADVPEGTLPDKQSTEEAIRL
LEKMKTSASPFFLAVGYHKPHIPFRYPKEFQKLYPLENITLAPDPHVPDSLPPVAYNPWMDIREREDVQA
LNISVPYGPIPEDFQRKIRQSYFASVSYLDTQVGHVLSALDDLRLAHNTIIAFTSDHGWALGEHGEWAKY
SNFDVATRVPLMLYVPGRTAPLPAAGQKLFPYRDPFDPASDWMDAGRHTEDLVELVSLFPTLAGLAGLPV
PPRCPIPSFHVELCREGQNLQKHLQLHDLEEEPDLFGNPRELIAYSQYPRPADFPQWNSDKPSLNDIKVM
GYSIRTVDYRYTVWVGFDPSEFLANFSDIHAGELYFVDSDPLQDHNVYNDSQHGGLLHSLRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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