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Report for CCDS41050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41050.1 Public Mus musculus X Gk 23 108 98 CCDS HistoryNCBI Gene:14933Re-query CCDS DB by CCDS ID:41050.1Re-query CCDS DB by GeneID:14933See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156390.7 ENSMUSP00000119564.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156390.7Link to Ensembl Protein Viewer:ENSMUSP00000119564.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156390Re-query CCDS DB by Protein ID:ENSMUSP00000119564
Original member Current member NCBI NM_212444.2 NP_997609.1 Accepted alive Link to Nucleotide Sequence:NM_212444.2Link to Protein Sequence:NP_997609.1Re-query CCDS DB by Nucleotide ID:NM_212444Re-query CCDS DB by Protein ID:NP_997609Link to BLAST:NP_997609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997609.1 553 Q64516-2 553 100% 0 0

Chromosomal Locations for CCDS 41050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 85704386 85704396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85706238 85706324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85711051 85711131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85712342 85712485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85712599 85712719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85713274 85713358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85714342 85714438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85715665 85715743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85730202 85730282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85730883 85730925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85736833 85736900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85737314 85737349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85740295 85740361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85741067 85741176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85743714 85743851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85746225 85746301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85754332 85754409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85760575 85760681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85761334 85761407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85776426 85776503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGCAGCCGCGAAGAAAGCAGTTCTGGGGCCATTGGTGGGAGCAGTGGACCAGGGTACCAGCTCGACAC
GTTTTTTGGTTTTCAATTCAAAAACAGCTGAACTTCTTAGTCATCATCAAGTAGAAATAAAACAGGAATT
CCCAAGAGAAGGATGGGTAGAACAAGACCCGAAGGAAATTCTGCAGTCTGTTTATGAGTGTATAGAGAAA
ACGTGTGAGAAACTTGGACAGCTCAATATTGATATTTCCAACATCAAAGCCATTGGTGTCAGCAACCAGA
GGGAAACCACAGTAGTCTGGGACAAGGTCACCGGAGAGCCTCTCTATAATGCCGTGGTGTGGCTTGACCT
AAGAACCCAGTCTACTGTTGAGAACCTTAGTAAAAGAATTCCAGGAAATAATAACTTTGTCAAGTCCAAG
ACAGGCCTTCCACTTAGCACGTATTTCAGTGCAGTGAAACTTCGTTGGCTCCTTGACAACGTGAAAAAGG
TCCAAGAGGCTGTTGAAGAAAATAGAGCTCTTTTTGGGACCATTGATTCATGGCTTATTTGGAGTTTAAC
AGGAGGAATCCATGGGGGTGTCCACTGTACAGATGTAACAAATGCAAGCAGGACGATGCTTTTTAACATT
CATTCTTTGGAATGGGATAAAGAGCTCTGCGAATTTTTTGGAATTCCAATGGAAATTCTTCCCAACGTTC
GGAGTTCTTCTGAGATCTATGGCCTAATGAAAGCTGGGGCCTTGGAAGGTGTACCAATATCTGGGTGTTT
GGGGGACCAGTCTGCTGCTTTGGTGGGACAAATGTGCTTCCAGGATGGACAGGCCAAAAACACGTATGGA
ACAGGGTGCTTCTTATTGTGCAACACGGGCCATAAGTGTGTATTTTCTGAACATGGCCTCCTGACAACCG
TAGCATATAAACTTGGCAGAGACAAACCTGTGTATTATGCGTTGGAAGGTTCCGTGGCTATAGCTGGTGC
TGTAATCCGCTGGCTAAGAGACAACCTTGGAATTATTAAGTCCTCTGAGGAAATTGAAAAACTTGCTAAG
GAAGTAGGTACTTCTTATGGCTGCTACTTCGTTCCAGCATTTTCAGGGTTATATGCGCCTTATTGGGAGC
CCAGTGCAAGAGGGATCATCTGTGGACTCACTCAGTTCACCAATAAATGTCATATCGCTTTTGCTGCACT
AGAAGCTGTTTGTTTCCAAACCCGAGAGATTTTGGATGCCATGAATCGCGACTGTGGAATTCCACTCAGT
CATTTACAGGTAGATGGAGGAATGACCAGCAATAAAATTCTTATGCAGCTACAAGCAGACATTCTGTATA
TTCCAGTAGTGAAACCCTCCATGCCTGAAACAACTGCACTAGGCGCTGCCATGGCAGCTGGGGCTGCAGA
GGGGGTTGGTGTGTGGAGTCTTGAACCTGAGGATTTGTCAGCTGTCACAATGGAGCGGTTTGAACCTCAG
ATCAATGCTGAAGAAAGCGAAATCCGTTACTCCACATGGAAGAAAGCTGTGATGAAGTCAATTGGTTGGG
TTACAACTCAGTCTCCAGAAAGTGGTGACCCTAGTATCTTCTGTAGTCTGCCTTTGGGCTTTTTTATAGT
GAGTAGCATGGTAATGTTAATCGGAGCAAGGTACATCTCAGGTATCCCATAA

Translation (553 aa):
MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEK
TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKVTGEPLYNAVVWLDLRTQSTVENLSKRIPGNNNFVKSK
TGLPLSTYFSAVKLRWLLDNVKKVQEAVEENRALFGTIDSWLIWSLTGGIHGGVHCTDVTNASRTMLFNI
HSLEWDKELCEFFGIPMEILPNVRSSSEIYGLMKAGALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYG
TGCFLLCNTGHKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAK
EVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDCGIPLS
HLQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEGVGVWSLEPEDLSAVTMERFEPQ
INAEESEIRYSTWKKAVMKSIGWVTTQSPESGDPSIFCSLPLGFFIVSSMVMLIGARYISGIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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