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Report for CCDS41061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41061.1 Public Mus musculus X Pcyt1b 23 108 98 CCDS HistoryNCBI Gene:236899Re-query CCDS DB by CCDS ID:41061.1Re-query CCDS DB by GeneID:236899See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113933.8 ENSMUSP00000109566.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113933.8Link to Ensembl Protein Viewer:ENSMUSP00000109566.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113933Re-query CCDS DB by Protein ID:ENSMUSP00000109566
Original member Current member NCBI NM_177546.2 NP_808214.1 Accepted alive Link to Nucleotide Sequence:NM_177546.2Link to Protein Sequence:NP_808214.1Re-query CCDS DB by Nucleotide ID:NM_177546Re-query CCDS DB by Protein ID:NP_808214Link to BLAST:NP_808214.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808214.1 339 Q811Q9-2 339 100% 0 0

Chromosomal Locations for CCDS 41061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 93655190 93655216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93702085 93702184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93706558 93706674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93717785 93717936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93720179 93720257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93731677 93731819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93734765 93734953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 93746219 93746431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGACAAGGACGAATTCTCACGCAAGACCCTGACTGCACCAGCCCCATTTGCTGATGAATCCAGCTGCC
AGTGCCAAGCACCTCATGAAAAACTGACCGTTGCCCAGGCCCGCTTAGGAACACCAGTTGATAGGCCTGT
TAGAGTGTATGCAGATGGAATATTTGACCTCTTCCACTCAGGTCACGCAAGGGCACTTATGCAAGCAAAA
ACACTGTTTCCCAACAGCTACTTGTTGGTAGGAGTTTGCAGTGATGACCTTACTCACAAATTCAAAGGTT
TTACTGTGATGAACGAGGCAGAGAGATATGAAGCTCTCAGACACTGTCGATACGTGGATGAAGTCATCAG
AGACGCGCCATGGACTCTTACTCCAGAGTTTCTGGAAAAACACAAGATTGACTTTGTGGCTCACGATGAT
ATTCCATACTCCTCTGCTGGTTCTGATGACGTTTATAAGCATATCAAGGAAGCAGGCATGTTTGTTCCAA
CACAAAGAACAGAAGGCATCTCAACATCAGACATCATCACCAGAATTGTCCGTGACTATGATGTATATGC
CCGGCGTAATCTCCAGAGAGGGTACACAGCCAAGGAGCTGAACGTCAGCTTTATAAACGAGAAGAAGTAC
CGTTTCCAGAACCAGGTGGACAAGATGAAAGAAAAGGTCAAGAATGTGGAAGAAAGATCAAAGGAGTTTG
TTAACAGAGTAGAAGAAAAGAGTCATGACCTAATTCAAAAGTGGGAAGAAAAATCAAGAGAGTTTATTGG
CAACTTCCTGGAACTGTTTGGGCCAGATGGTGCATGGAAGCAGATGTTCCAGGAGAGGAGTAGCCGGATG
CTGCAGGCATTATCTCCGAAGCAGAGTCCTGTGAGCAGCCCGACCCGGAGCCGGTCCCCTTCTCGCTCTC
CATCTCCTACCTTCTCCTGGCTCCCAAACAAGACCTCTCCCCCCTCCTCACCCAAAGCAGCCTCAGCCTC
CATCAGCAGCATGAGCGAGGGGGATGAGGATGAGAAGTAA

Translation (339 aa):
MDKDEFSRKTLTAPAPFADESSCQCQAPHEKLTVAQARLGTPVDRPVRVYADGIFDLFHSGHARALMQAK
TLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDD
IPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKY
RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRM
LQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPNKTSPPSSPKAASASISSMSEGDEDEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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