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Report for CCDS41189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41189.1 Public Mus musculus X Sms 23 108 98 CCDS HistoryNCBI Gene:20603Re-query CCDS DB by CCDS ID:41189.1Re-query CCDS DB by GeneID:20603See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112529.7 ENSMUSP00000108148.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112529.7Link to Ensembl Protein Viewer:ENSMUSP00000108148.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112529Re-query CCDS DB by Protein ID:ENSMUSP00000108148
Original member Current member NCBI NM_009214.4 NP_033240.3 Accepted alive Link to Nucleotide Sequence:NM_009214.4Link to Protein Sequence:NP_033240.3Re-query CCDS DB by Nucleotide ID:NM_009214Re-query CCDS DB by Protein ID:NP_033240Link to BLAST:NP_033240.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033240.3 366 P97355 366 100% 0 0

Chromosomal Locations for CCDS 41189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 157446137 157446176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157447355 157447470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157454834 157454913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157455994 157456108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157460327 157460416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157461176 157461330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157461961 157462136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157465824 157465888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157466398 157466491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157469988 157470108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157491905 157491953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGCAGCAGCAAGACACAGCACGCTCGACTTCAAGCTCGGCGCCAAAGCTGATGGTGAGGCCATTCTGA
AAGGCCTTCAGTCCATTTTTCAGGAGCAGGGGATGACAGAGTCAGTGCACACCTGGCAGGACCATGGATA
TTTAGCAACTTACACGAACAAGAATGGCAGCTTTGCCAATTTGCGAATTTATCCACATGGATTGGTGTTG
CTGGACCTTCAGAGTTACGACAGTGATGTGCAAGGCAAACAAGAAACTGACAGCCTTTTGAACAAAATAG
AAGAAAAAATGAAAGAATTGAGTCAAGACAGTACTGGGCGGGTGAAGCGATTACCACCCATAGTTCGCGG
AGGGGCCATTGACAGATACTGGCCTACTGCTGATGGGCGCCTGGTTGAGTATGACATAGATGAAGTGGTG
TATGATGAAGATTCACCATATCAGAACATCAAAATCCTACACTCGAAGCAGTTTGGGAATATTCTCATCC
TCAGCGGGGATGTTAATTTGGCAGAGAGTGACTTGGCATATACCCGTGCCATCATGGGCAGTGGTAAAGA
AGACTACACTGGCAAAGATGTACTGATTCTGGGAGGCGGCGATGGAGGCATATTGTGTGAAATTGTCAAA
CTGAAACCAAAGATGGTCACTATGGTAGAGATTGACCAAATGGTAATTGATGGATGTAAGAAATACATGC
GGAGAACATGTGGAGATGTCTTAGACAATCTTAGAGGAGACTGCTATCAGGTTCTTATAGAAGACTGTAT
CCCAGTACTGAAGATGTACGCCAAAGAAGGGAGAGAGTTTGATTATGTGATTAATGATTTGACAGCTGTC
CCTATCTCTACATCTCCAGAAGAAGATTCCACATGGGATTTCCTCAGACTGATTCTCGACCTGTCAATGA
AGGTTCTGAAACAGGATGGAAAATACTTCACACAGGGGAACTGTGTCAACTTGACTGAAGCCCTGTCGCT
CTATGAAGAACAGCTGGGGCGTCTGTATTGTCCTGTGGAATTCTCAAAAGAGATTGTCTGTGTCCCTTCA
TACTTGGAATTGTGGGTGTTTTACACTGTTTGGAAGAAAGCTAAGCCTTAA

Translation (366 aa):
MAAARHSTLDFKLGAKADGEAILKGLQSIFQEQGMTESVHTWQDHGYLATYTNKNGSFANLRIYPHGLVL
LDLQSYDSDVQGKQETDSLLNKIEEKMKELSQDSTGRVKRLPPIVRGGAIDRYWPTADGRLVEYDIDEVV
YDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVK
LKPKMVTMVEIDQMVIDGCKKYMRRTCGDVLDNLRGDCYQVLIEDCIPVLKMYAKEGREFDYVINDLTAV
PISTSPEEDSTWDFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPS
YLELWVFYTVWKKAKP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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