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Report for CCDS41202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41202.1 Public Mus musculus X Ctps2 23 108 98 CCDS HistoryNCBI Gene:55936Re-query CCDS DB by CCDS ID:41202.1Re-query CCDS DB by GeneID:55936See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41202.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033727.13 ENSMUSP00000033727.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033727.13Link to Ensembl Protein Viewer:ENSMUSP00000033727.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033727Re-query CCDS DB by Protein ID:ENSMUSP00000033727
Original member Current member EBI ENSMUST00000112301.7 ENSMUSP00000107920.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112301.7Link to Ensembl Protein Viewer:ENSMUSP00000107920.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112301Re-query CCDS DB by Protein ID:ENSMUSP00000107920
Original member Current member EBI ENSMUST00000112303.7 ENSMUSP00000107922.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112303.7Link to Ensembl Protein Viewer:ENSMUSP00000107922.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112303Re-query CCDS DB by Protein ID:ENSMUSP00000107922
Original member Current member NCBI NM_001168568.1 NP_001162040.1 Accepted alive Link to Nucleotide Sequence:NM_001168568.1Link to Protein Sequence:NP_001162040.1Re-query CCDS DB by Nucleotide ID:NM_001168568Re-query CCDS DB by Protein ID:NP_001162040Link to BLAST:NP_001162040.1
Original member Current member NCBI NM_001168569.1 NP_001162041.1 Accepted alive Link to Nucleotide Sequence:NM_001168569.1Link to Protein Sequence:NP_001162041.1Re-query CCDS DB by Nucleotide ID:NM_001168569Re-query CCDS DB by Protein ID:NP_001162041Link to BLAST:NP_001162041.1
Original member Current member NCBI NM_018737.5 NP_061207.1 Accepted alive Link to Nucleotide Sequence:NM_018737.5Link to Protein Sequence:NP_061207.1Re-query CCDS DB by Nucleotide ID:NM_018737Re-query CCDS DB by Protein ID:NP_061207Link to BLAST:NP_061207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162040.1 586 P70303-1 586 100% 0 0
NP_001162041.1 586 P70303-1 586 100% 0 0
NP_061207.1 586 P70303-1 586 100% 0 0

Chromosomal Locations for CCDS 41202.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 162903473 162903638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162910009 162910179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162913208 162913308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162921199 162921315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162921450 162921533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162922390 162922470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162927405 162927556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162931627 162931759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162934287 162934375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162936711 162936805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162941647 162941709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162941801 162941844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162975183 162975279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162996705 162996760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 163000062 163000158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 163011062 163011206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 163029767 163029836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGAAGTATATCCTGGTTACTGGTGGGGTCATCTCAGGCATTGGTAAAGGGATTATCGCCAGCAGCATTG
GGACTATTCTCAAGTCATGTGGACTCCGAGTTACTGCCATCAAAATTGACCCCTATATTAACATCGATGC
TGGAACTTTCTCACCTTATGAACATGGTGAAGTATTTGTTTTAAATGATGGTGGAGAAGTTGATTTGGAC
CTTGGAAACTATGAAAGATTCTTGGACATTAATCTCTATAAAGACAACAACATCACCACTGGGAAGATAT
ATCAGCATGTGATCAACAAAGAGAGGCGCGGTGATTACCTGGGGAAAACTGTTCAAGTTGTCCCCCATAT
TACTGATGCTATCCAGGAGTGGGTTATGAATCAAGCCAAGGTGTCTGTGGATGGCAATAAGGAAGATCCC
CAGATATGTGTTATTGAGCTGGGAGGCACCATTGGAGACATTGAAGGAATGGCATTTGTGGAAGCATTCC
GACAGTTCCAGTTTAAAGCCAAGAAAGAGAATTTCTATAATATTCATGTCAGCCTTGTGCCACAGCCCAG
TGCTACTGGAGAACAAAAAACCAAGCCCACGCAAAACAGTGTCCGTGCGCTGAGAGGGTTGGGCTTGTCT
CCGGATCTGATCGTCTGCCGTAGTTCAACCCCCATTGAGATGGCTGTGAAGGAGAAGATTTCTATGTTTT
GTCACGTGAACCCTGAACAGGTCATCTGTATCCATGATGTTTCTTCCATCTACCGAGTGCCTCTCCTTTT
GGAGGAGCAAGGTGTGGTTAAATATTTTCAAGAGAGATTGGGCCTGCCCATCAATGATTGTTCAAGTAAT
TTGCTTTTCAAGTGGAAAGCCATGGCTGACAGGTATGAGAGATTGCAGAAAATATGTTCCATAGCCCTGG
TTGGTAAATACACCAAACTCAGGGACTGCTACGCCTCTGTGTTCAAAGCACTGGAACACTCAGCCTTGGC
CATCAACCACAAGTTGAACCTGATGTACATAGACTCCATTGATCTGGAGCCAGTCACCAAAGCCGAGGAT
CCTGTGAAATTCCATGAAGCTTGGCAGAAGCTGTGCTTAGCTGATGGGATTCTTGTGCCCGGAGGGTTTG
GAATCCGAGGAACATTGGGAAAACTCCAGGCAATTTCGTGGGCAAGGACAAAGAAGATTCCATTTCTGGG
AATTTGCCTTGGGATGCAACTGGCAGTGATTGAGTTTGCAAGAAACTGCCTGAACTTGAAAGATGCTAAT
TCTACAGAATTTGAGCCAAACACTCCAGTCCCATTGGTAATTGACATGCCTGAACACAACCCTGGCGATT
TGGGAGGAACAATGAGACTGGGGTTAAGACGAACTGTTTTCACAACTGAAAACTCCATACTGAAGAAGCT
TTATGGTGACGTTCCTTACATAGAAGAAAGACACCGACATCGCTATGAGGTGAACCCTAACCTGATCAAC
CAATTTGAGAATAAAGACCTTTGTTTTGTCGGTGAGGATGTAGATGGGAAGAGGATGGAAATTGTTGAGT
TGACAAGTCATCCATATTTCATTGGTGTCCAGTTCCATCCTGAGTTTTCCTCTAGGCCAATGAAGCCTTC
CCCTCCGTACCTGGGGCTCTTACTTGCAGCAACGGGGAATCTGAATGCCCATCTGCAGCAGATGAACAAG
CTGCCATACAGTGATGGATACAGTGATGCCAGCGATGACAGCTTTCCAGAGGCAAAGCTTGCTGAACTGG
ATCTCAACTGA

Translation (586 aa):
MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDGGEVDLD
LGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAIQEWVMNQAKVSVDGNKEDP
QICVIELGGTIGDIEGMAFVEAFRQFQFKAKKENFYNIHVSLVPQPSATGEQKTKPTQNSVRALRGLGLS
PDLIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSIYRVPLLLEEQGVVKYFQERLGLPINDCSSN
LLFKWKAMADRYERLQKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEPVTKAED
PVKFHEAWQKLCLADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGICLGMQLAVIEFARNCLNLKDAN
STEFEPNTPVPLVIDMPEHNPGDLGGTMRLGLRRTVFTTENSILKKLYGDVPYIEERHRHRYEVNPNLIN
QFENKDLCFVGEDVDGKRMEIVELTSHPYFIGVQFHPEFSSRPMKPSPPYLGLLLAATGNLNAHLQQMNK
LPYSDGYSDASDDSFPEAKLAELDLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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