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Report for CCDS4145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4145.1 Public Homo sapiens 5 SLC27A6 24 110 108 CCDS HistoryNCBI Gene:28965Re-query CCDS DB by CCDS ID:4145.1Re-query CCDS DB by GeneID:28965See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262462.9 ENSP00000262462.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262462.9Link to Ensembl Protein Viewer:ENSP00000262462.4Re-query CCDS DB by Nucleotide ID:ENST00000262462Re-query CCDS DB by Protein ID:ENSP00000262462
Original member Current member EBI ENST00000395266.5 ENSP00000378684.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395266.5Link to Ensembl Protein Viewer:ENSP00000378684.1Re-query CCDS DB by Nucleotide ID:ENST00000395266Re-query CCDS DB by Protein ID:ENSP00000378684
Original member Current member EBI ENST00000506176.1 ENSP00000421024.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506176.1Link to Ensembl Protein Viewer:ENSP00000421024.1Re-query CCDS DB by Nucleotide ID:ENST00000506176Re-query CCDS DB by Protein ID:ENSP00000421024
Original member Current member NCBI NM_001017372.3 NP_001017372.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017372.3Link to Protein Sequence:NP_001017372.1Re-query CCDS DB by Nucleotide ID:NM_001017372Re-query CCDS DB by Protein ID:NP_001017372Link to BLAST:NP_001017372.1
Original member Current member NCBI NM_001317984.2 NP_001304913.1 Accepted alive Link to Nucleotide Sequence:NM_001317984.2Link to Protein Sequence:NP_001304913.1Re-query CCDS DB by Nucleotide ID:NM_001317984Re-query CCDS DB by Protein ID:NP_001304913Link to BLAST:NP_001304913.1
Original member Current member NCBI NM_014031.5 NP_054750.1 Accepted alive Link to Nucleotide Sequence:NM_014031.5Link to Protein Sequence:NP_054750.1Re-query CCDS DB by Nucleotide ID:NM_014031Re-query CCDS DB by Protein ID:NP_054750Link to BLAST:NP_054750.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017372.1 619 Q9Y2P4 619 100% 0 0
NP_001304913.1 619 Q9Y2P4 619 100% 0 0
NP_054750.1 619 Q9Y2P4 619 100% 0 0

Chromosomal Locations for CCDS 4145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 128966138 128966618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128985133 128985336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128988600 128988758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128990340 128990464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129015885 129016079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129023620 129023710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129027133 129027331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129028345 129028442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129029577 129029707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129033106 129033282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGCTTCTGTCATGGCTAACAGTTCTAGGGGCTGGAATGGTCGTCCTGCACTTCTTGCAGAAACTCCTGT
TCCCTTACTTTTGGGATGACTTCTGGTTCGTGTTGAAGGTGGTGCTCATTATAATTCGGCTGAAGAAGTA
TGAAAAGAGAGGGGAGCTGGTGACTGTGCTGGATAAATTCTTGAGTCATGCCAAAAGACAACCTCGGAAA
CCTTTCATCATCTATGAGGGAGACATCTACACCTATCAGGATGTAGACAAAAGGAGCAGCAGAGTGGCCC
ATGTCTTCCTGAACCATTCCTCTCTGAAAAAGGGGGACACGGTGGCTCTGCTGATGAGCAATGAGCCGGA
CTTCGTTCACGTGTGGTTCGGCCTCGCCAAGCTGGGCTGCGTGGTGGCCTTTCTCAACACCAACATTCGC
TCCAACTCCCTCCTGAATTGCATCCGCGCCTGTGGGCCCAGAGCCCTAGTGGTGGGCGCAGATTTGCTTG
GAACGGTAGAAGAAATCCTTCCAAGCCTCTCAGAAAATATCAGTGTTTGGGGGATGAAAGATTCTGTTCC
ACAAGGTGTAATTTCACTCAAAGAAAAACTGAGCACCTCACCTGATGAGCCCGTGCCACGCAGCCACCAT
GTTGTCTCACTCCTCAAGTCTACTTGTCTTTACATTTTTACCTCTGGAACAACAGGTCTACCAAAAGCAG
CTGTGATTAGTCAGCTGCAGGTTTTAAGGGGTTCTGCTGTCCTGTGGGCTTTTGGTTGTACTGCTCATGA
CATTGTTTATATAACCCTTCCTCTGTATCATAGTTCAGCAGCTATCCTGGGAATTTCTGGATGTGTTGAG
TTGGGTGCCACTTGTGTGTTAAAGAAGAAATTTTCAGCAAGCCAGTTTTGGAGTGACTGCAAGAAGTATG
ATGTGACTGTGTTTCAGTATATTGGAGAACTTTGTCGCTACCTTTGCAAACAATCTAAGAGAGAAGGAGA
AAAGGATCATAAGGTGCGTTTGGCAATTGGAAATGGCATACGGAGTGATGTATGGAGAGAATTTTTAGAC
AGATTTGGAAATATAAAGGTGTGTGAACTTTATGCAGCTACCGAATCAAGCATATCTTTCATGAACTACA
CTGGGAGAATTGGAGCAATTGGGAGAACAAATTTGTTTTACAAACTTCTTTCCACTTTTGACTTAATAAA
GTATGACTTTCAGAAAGATGAACCCATGAGAAATGAGCAGGGTTGGTGTATTCATGTGAAAAAAGGAGAA
CCTGGACTTCTCATTTCTCGAGTGAATGCAAAAAATCCCTTCTTTGGCTATGCTGGGCCTTATAAGCACA
CAAAAGACAAATTGCTTTGTGATGTTTTTAAGAAGGGAGATGTTTACCTTAATACTGGAGACTTAATAGT
CCAGGATCAGGACAATTTCCTTTATTTTTGGGACCGTACTGGAGACACTTTCAGATGGAAAGGAGAAAAT
GTCGCAACCACTGAGGTTGCTGATGTTATTGGAATGTTGGATTTCATACAGGAAGCAAACGTCTATGGTG
TGGCTATATCAGGTTATGAAGGAAGAGCAGGAATGGCTTCTATTATTTTAAAACCAAATACATCTTTAGA
TTTGGAAAAAGTTTATGAACAAGTTGTAACATTTCTACCAGCTTATGCTTGTCCACGATTTTTAAGAATT
CAGGAAAAAATGGAAGCAACAGGAACATTCAAACTATTGAAGCATCAGTTGGTGGAAGATGGATTTAATC
CACTGAAAATTTCTGAACCACTTTACTTCATGGATAACTTGAAAAAGTCTTATGTTCTACTGACCAGGGA
ACTTTATGATCAAATAATGTTAGGGGAAATAAAACTTTAA

Translation (619 aa):
MLLSWLTVLGAGMVVLHFLQKLLFPYFWDDFWFVLKVVLIIIRLKKYEKRGELVTVLDKFLSHAKRQPRK
PFIIYEGDIYTYQDVDKRSSRVAHVFLNHSSLKKGDTVALLMSNEPDFVHVWFGLAKLGCVVAFLNTNIR
SNSLLNCIRACGPRALVVGADLLGTVEEILPSLSENISVWGMKDSVPQGVISLKEKLSTSPDEPVPRSHH
VVSLLKSTCLYIFTSGTTGLPKAAVISQLQVLRGSAVLWAFGCTAHDIVYITLPLYHSSAAILGISGCVE
LGATCVLKKKFSASQFWSDCKKYDVTVFQYIGELCRYLCKQSKREGEKDHKVRLAIGNGIRSDVWREFLD
RFGNIKVCELYAATESSISFMNYTGRIGAIGRTNLFYKLLSTFDLIKYDFQKDEPMRNEQGWCIHVKKGE
PGLLISRVNAKNPFFGYAGPYKHTKDKLLCDVFKKGDVYLNTGDLIVQDQDNFLYFWDRTGDTFRWKGEN
VATTEVADVIGMLDFIQEANVYGVAISGYEGRAGMASIILKPNTSLDLEKVYEQVVTFLPAYACPRFLRI
QEKMEATGTFKLLKHQLVEDGFNPLKISEPLYFMDNLKKSYVLLTRELYDQIMLGEIKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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