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Report for CCDS41669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41669.1 Public Homo sapiens 11 TM7SF2 24 110 108 CCDS HistoryNCBI Gene:7108Re-query CCDS DB by CCDS ID:41669.1Re-query CCDS DB by GeneID:7108See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41669.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279263.14 ENSP00000279263.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000279263.14Link to Ensembl Protein Viewer:ENSP00000279263.7Re-query CCDS DB by Nucleotide ID:ENST00000279263Re-query CCDS DB by Protein ID:ENSP00000279263
Original member Current member NCBI NM_003273.6 NP_003264.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003273.6Link to Protein Sequence:NP_003264.2Re-query CCDS DB by Nucleotide ID:NM_003273Re-query CCDS DB by Protein ID:NP_003264Link to BLAST:NP_003264.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003264.2 418 O76062-1 418 100% 0 0

Chromosomal Locations for CCDS 41669.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65112016 65112067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65112515 65112711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65112811 65112865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65113220 65113414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65113491 65113594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65114713 65114832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65114913 65115081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65115314 65115394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65115476 65115598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65115893 65116053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCCCCCACTCAGGGCCCCCGGGCCCCGCTGGAATTCGGAGGGCCCCTGGGCGCCGCGGCTCTGCTAC
TGCTGCTGCCCGCCACCATGTTCCACCTGCTCCTGGCGGCCCGTTCGGGCCCCGCGCGCCTGCTGGGTCC
ACCCGCGTCCCTGCCGGGGCTGGAGGTGCTGTGGAGCCCACGGGCGCTGCTGCTGTGGCTCGCCTGGCTC
GGCCTGCAGGCGGCGCTCTACCTACTGCCGGCGCGCAAGGTGGCCGAGGGGCAGGAATTGAAGGACAAGA
GTCGCCTGCGCTATCCTATTAACGGCTTCCAGGCCCTGGTGCTGACAGCCCTGTTGGTGGGGCTGGGGAT
GTCAGCGGGGCTGCCTCTGGGGGCGCTCCCGGAAATGCTCCTGCCCTTGGCGTTTGTCGCCACCCTCACC
GCTTTCATCTTCAGCCTCTTTCTCTACATGAAGGCGCAGGTAGCCCCAGTTTCGGCCCTGGCACCTGGGG
GGAACTCAGGCAATCCGATTTACGACTTTTTTCTGGGACGAGAGCTCAACCCTCGTATCTGTTTCTTCGA
CTTCAAATATTTCTGTGAACTGCGACCCGGCCTCATCGGCTGGGTCCTCATCAACCTGGCCCTGTTGATG
AAGGAGGCAGAGCTTCGAGGCAGTCCCTCACTGGCCATGTGGCTGGTCAATGGCTTCCAGTTGCTCTACG
TGGGTGATGCCCTCTGGCACGAGGAGGCCGTCCTCACCACCATGGATATCACACATGACGGGTTTGGCTT
CATGCTGGCGTTTGGGGACATGGCCTGGGTGCCCTTCACCTACAGCCTGCAGGCCCAGTTCCTGCTGCAC
CACCCGCAGCCCCTGGGGTTGCCCATGGCCTCTGTCATCTGCCTCATCAATGCTACTGGTTACTACATCT
TCCGTGGGGCGAATTCCCAGAAAAACACTTTCCGAAAGAATCCTTCTGACCCCAGAGTGGCTGGGCTTGA
GACCATCTCTACAGCCACAGGGCGGAAACTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGCCATCCCAAC
TATCTTGGAGACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGCGGGGTGTCACACCTGCTGCCCTACT
TCTACCTCCTCTACTTCACCGCGCTGCTGGTGCACCGTGAGGCCCGGGATGAGCGGCAGTGCCTGCAGAA
GTACGGCCTGGCCTGGCAGGAGTACTGCCGGCGTGTGCCTTACCGCATCATGCCCTACATCTACTGA

Translation (418 aa):
MAPTQGPRAPLEFGGPLGAAALLLLLPATMFHLLLAARSGPARLLGPPASLPGLEVLWSPRALLLWLAWL
GLQAALYLLPARKVAEGQELKDKSRLRYPINGFQALVLTALLVGLGMSAGLPLGALPEMLLPLAFVATLT
AFIFSLFLYMKAQVAPVSALAPGGNSGNPIYDFFLGRELNPRICFFDFKYFCELRPGLIGWVLINLALLM
KEAELRGSPSLAMWLVNGFQLLYVGDALWHEEAVLTTMDITHDGFGFMLAFGDMAWVPFTYSLQAQFLLH
HPQPLGLPMASVICLINATGYYIFRGANSQKNTFRKNPSDPRVAGLETISTATGRKLLVSGWWGMVRHPN
YLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLVHREARDERQCLQKYGLAWQEYCRRVPYRIMPYIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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