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Report for CCDS41769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41769.1 Public Homo sapiens 12 ALG10 24 110 108 CCDS HistoryNCBI Gene:84920Re-query CCDS DB by CCDS ID:41769.1Re-query CCDS DB by GeneID:84920See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41769.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266483.7 ENSP00000266483.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266483.7Link to Ensembl Protein Viewer:ENSP00000266483.2Re-query CCDS DB by Nucleotide ID:ENST00000266483Re-query CCDS DB by Protein ID:ENSP00000266483
Original member Current member NCBI NM_032834.4 NP_116223.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032834.4Link to Protein Sequence:NP_116223.3Re-query CCDS DB by Nucleotide ID:NM_032834Re-query CCDS DB by Protein ID:NP_116223Link to BLAST:NP_116223.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116223.3 473 Q5BKT4 473 100% 0 0

Chromosomal Locations for CCDS 41769.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 34022600 34022770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 34023962 34024159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 34025863 34026915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCGCAGCTGGAAGGTTACTATTTCTCGGCCGCCTTGAGCTGTACCTTTTTAGTATCCTGCCTCCTCT
TCTCCGCCTTCAGCCGGGCGTTGCGAGAGCCCTACATGGACGAGATCTTCCACCTGCCTCAGGCGCAGCG
CTACTGTGAGGGCCATTTCTCCCTTTCCCAGTGGGATCCCATGATTACTACATTACCTGGCTTGTACCTG
GTGTCAATTGGAGTGATCAAACCTGCCATTTGGATCTTTGGATGGTCTGAACATGTTGTCTGCTCCATTG
GGATGCTCAGATTTGTTAATCTTCTCTTCAGTGTTGGCAACTTCTATTTACTATATTTGCTTTTCTGCAA
GGTACAACCCAGAAACAAGGCTGCCTCAAGTATCCAGAGAGTCTTGTCAACATTAACACTAGCAGTATTT
CCAACACTTTATTTTTTTAACTTCCTTTATTATACAGAAGCAGGATCTATGTTTTTTACTCTTTTTGCGT
ATTTGATGTGTCTTTATGGAAATCATAAAACTTCAGCCTTCCTTGGATTTTGTGGCTTCATGTTTCGGCA
AACAAATATCATCTGGGCTGTCTTCTGTGCAGGAAATGTCATTGCACAAAAGTTAACGGAGGCTTGGAAA
ACTGAGCTACAAAAGAAGGAAGACAGACTTCCACCTATTAAAGGACCATTTGCAGAATTCAGAAAAATTC
TTCAGTTTCTTTTGGCTTATTCCATGTCCTTTAAAAACTTGAGTATGCTTTTGCTTCTGACTTGGCCCTA
CATCCTTCTGGGATTTCTGTTTTGTGCTTTTGTAGTAGTTAATGGTGGAATTGTTATTGGCGATCGGAGT
AGTCATGAAGCCTGTCTTCATTTTCCTCAACTATTCTACTTTTTTTCATTTACTCTCTTTTTTTCCTTTC
CTCATCTCCTGTCTCCTAGCAAAATTAAGACTTTTCTTTCCTTAGTTTGGAAACGTAGAATTCTGTTTTT
TGTGGTTACCTTAGTCTCTGTGTTTTTAGTTTGGAAATTCACTTATGCTCATAAATACTTGCTAGCAGAC
AATAGACATTATACTTTCTATGTGTGGAAAAGAGTTTTTCAAAGATATGAAACTGTAAAATATTTGTTAG
TTCCAGCCTATATATTTGCTGGTTGGAGTATAGCTGACTCATTGAAATCAAAGTCAATTTTTTGGAATTT
AATGTTTTTCATATGCTTGTTCACTGTTATAGTTCCTCAGAAACTGCTGGAATTTCGTTACTTCATTTTA
CCTTATGTCATTTATAGGCTTAACATACCTCTGCCTCCCACATCCAGACTCATTTGTGAACTGAGCTGCT
ATGCAGTTGTTAATTTCATAACTTTTTTCATCTTTCTGAACAAGACTTTTCAGTGGCCAAATAGTCAGGA
CATTCAAAGGTTTATGTGGTAA

Translation (473 aa):
MAQLEGYYFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGHFSLSQWDPMITTLPGLYL
VSIGVIKPAIWIFGWSEHVVCSIGMLRFVNLLFSVGNFYLLYLLFCKVQPRNKAASSIQRVLSTLTLAVF
PTLYFFNFLYYTEAGSMFFTLFAYLMCLYGNHKTSAFLGFCGFMFRQTNIIWAVFCAGNVIAQKLTEAWK
TELQKKEDRLPPIKGPFAEFRKILQFLLAYSMSFKNLSMLLLLTWPYILLGFLFCAFVVVNGGIVIGDRS
SHEACLHFPQLFYFFSFTLFFSFPHLLSPSKIKTFLSLVWKRRILFFVVTLVSVFLVWKFTYAHKYLLAD
NRHYTFYVWKRVFQRYETVKYLLVPAYIFAGWSIADSLKSKSIFWNLMFFICLFTVIVPQKLLEFRYFIL
PYVIYRLNIPLPPTSRLICELSCYAVVNFITFFIFLNKTFQWPNSQDIQRFMW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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