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Report for CCDS42740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42740.1 Public Homo sapiens 2 DBI 24 110 108 CCDS HistoryNCBI Gene:1622Re-query CCDS DB by CCDS ID:42740.1Re-query CCDS DB by GeneID:1622See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42740.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355857.8 ENSP00000348116.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355857.8Link to Ensembl Protein Viewer:ENSP00000348116.3Re-query CCDS DB by Nucleotide ID:ENST00000355857Re-query CCDS DB by Protein ID:ENSP00000348116
Original member Current member NCBI NM_001079862.4 NP_001073331.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001079862.4Link to Protein Sequence:NP_001073331.1Re-query CCDS DB by Nucleotide ID:NM_001079862Re-query CCDS DB by Protein ID:NP_001073331Link to BLAST:NP_001073331.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073331.1 87 P07108-1 87 100% 0 0

Chromosomal Locations for CCDS 42740.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119367052 119367060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119368188 119368305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119370740 119370802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119372245 119372318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGTCTCAGGCTGAGTTTGAGAAAGCTGCAGAGGAGGTTAGGCACCTTAAGACCAAGCCATCGGATGAGG
AGATGCTGTTCATCTATGGCCACTACAAACAAGCAACTGTGGGCGACATAAATACAGAACGGCCCGGGAT
GTTGGACTTCACGGGCAAGGCCAAGTGGGATGCCTGGAATGAGCTGAAAGGGACTTCCAAGGAAGATGCC
ATGAAAGCTTACATCAACAAAGTAGAAGAGCTAAAGAAAAAATACGGGATATGA

Translation (87 aa):
MSQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDA
MKAYINKVEELKKKYGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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