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Report for CCDS42886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42886.1 Public Homo sapiens 20 SLC13A3 24 110 108 CCDS HistoryNCBI Gene:64849Re-query CCDS DB by CCDS ID:42886.1Re-query CCDS DB by GeneID:64849See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290317.9 ENSP00000290317.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000290317.9Link to Ensembl Protein Viewer:ENSP00000290317.5Re-query CCDS DB by Nucleotide ID:ENST00000290317Re-query CCDS DB by Protein ID:ENSP00000290317
Original member Current member EBI ENST00000495082.5 ENSP00000419621.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000495082.5Link to Ensembl Protein Viewer:ENSP00000419621.1Re-query CCDS DB by Nucleotide ID:ENST00000495082Re-query CCDS DB by Protein ID:ENSP00000419621
Original member Current member NCBI NM_001011554.3 NP_001011554.1 Accepted alive Link to Nucleotide Sequence:NM_001011554.3Link to Protein Sequence:NP_001011554.1Re-query CCDS DB by Nucleotide ID:NM_001011554Re-query CCDS DB by Protein ID:NP_001011554Link to BLAST:NP_001011554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011554.1 555 Q8WWT9-6 555 100% 0 0

Chromosomal Locations for CCDS 42886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46560022 46560198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46563414 46563551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46566229 46566390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46575573 46575685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46583572 46583669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46588059 46588163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46589160 46589255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46592404 46592529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46596157 46596342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46599971 46600037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46610446 46610609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46613460 46613695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCGGTGTACTGGTGCACGGAGGCCCTGCCGCTCTCAGTGACGGCGCTGCTGCCCATCGTCCTCTTCC
CCTTCATGGGCATCTTGCCCTCCAACAAGGTCTGCCCCCAGTACTTCCTCGACACCAACTTCCTCTTCCT
CAGTGGGCTGATCATGGCCAGCGCCATTGAGGAGTGGAACCTGCACCGGCGAATCGCCCTCAAGATCCTG
ATGCTTGTTGGAGTCCAGCCGGCCAGGCTCATCCTGGGGATGATGGTGACCACCTCGTTCTTGTCCATGT
GGCTGAGCAACACCGCCTCCACTGCCATGATGCTTCCCATTGCCAATGCCATCCTGAAAAGTCTCTTTGG
CCAGAAGGAGGTTCGAAAGGACCCCAGCCAGGAGAGTGAAGAGAACACAGCTGCTGTGCGGAGAAACGGC
CTACACACTGTGCCCACGGAGATGCAGTTTCTCGCCAGCACAGAAGCCAAAGACCACCCTGGGGAGACAG
AGGTTCCACTGGATCTGCCGGCTGACTCCAGGAAGGAGGATGAATATCGTCGGAACATCTGGAAGGGCTT
CCTCATCTCCATCCCCTACTCAGCCAGTATTGGGGGCACAGCCACACTCACGGGCACAGCCCCTAACCTC
ATCCTGCTTGGCCAGCTCAAGAGTTTCTTTCCGCAGTGTGACGTGGTGAATTTCGGCTCCTGGTTCATTT
TCGCCTTCCCTCTTATGCTGTTGTTCCTGTTGGCAGGCTGGCTCTGGATCTCCTTCCTGTACGGGGGACT
GAGCTTCAGGGGCTGGAGGAAGAATAAATCTGAGATAAGAACCAATGCAGAAGATAGGGCTCGAGCTGTA
ATTCGGGAAGAATACCAGAACCTGGGGCCCATCAAGTTTGCCGAACAGGCTGTTTTCATCCTTTTCTGCA
TGTTTGCCATCCTCCTCTTCACCCGGGACCCGAAGTTCATCCCTGGCTGGGCCAGCCTCTTCAATCCTGG
GTTTCTTTCTGATGCTGTCACCGGCGTGGCTATTGTCACCATCTTGTTCTTCTTCCCGTCCCAAAGGCCC
TCTCTCAAGTGGTGGTTTGACTTCAAAGCTCCCAACACAGAGACAGAGCCCTTGCTGACCTGGAAGAAGG
CCCAGGAGACAGTGCCCTGGAACATCATCCTTCTCCTGGGAGGGGGCTTCGCCATGGCCAAAGGCTGTGA
GGAATCGGGGCTGTCTGTATGGATTGGTGGGCAGCTGCACCCCCTGGAGAATGTGCCCCCCGCCCTGGCT
GTGCTGCTCATCACTGTGGTCATCGCCTTCTTCACTGAGTTTGCCAGCAACACGGCGACCATCATCATCT
TCCTGCCGGTCCTGGCAGAGCTGGCCATCCGCCTGAGAGTGCACCCCCTGTATCTGATGATTCCGGGCAC
AGTCGGCTGCTCCTTTGCCTTCATGCTCCCGGTCTCAACGCCCCCCAACTCCATCGCCTTCGCCTCTGGA
CACTTGCTGGTCAAAGACATGGTGCGGACAGGCCTCCTGATGAACCTGATGGGTGTCCTGCTGCTCAGTT
TGGCTATGAATACCTGGGCACAGACCATCTTCCAGCTGGGCACCTTCCCGGACTGGGCTGATATGTACTC
GGTCAATGTCACAGCATTGCCACCCACCTTGGCCAATGACACATTTCGGACCCTCTGA

Translation (555 aa):
MAVYWCTEALPLSVTALLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKIL
MLVGVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSLFGQKEVRKDPSQESEENTAAVRRNG
LHTVPTEMQFLASTEAKDHPGETEVPLDLPADSRKEDEYRRNIWKGFLISIPYSASIGGTATLTGTAPNL
ILLGQLKSFFPQCDVVNFGSWFIFAFPLMLLFLLAGWLWISFLYGGLSFRGWRKNKSEIRTNAEDRARAV
IREEYQNLGPIKFAEQAVFILFCMFAILLFTRDPKFIPGWASLFNPGFLSDAVTGVAIVTILFFFPSQRP
SLKWWFDFKAPNTETEPLLTWKKAQETVPWNIILLLGGGFAMAKGCEESGLSVWIGGQLHPLENVPPALA
VLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASG
HLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIFQLGTFPDWADMYSVNVTALPPTLANDTFRTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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