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Report for CCDS4300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4300.1 Public Homo sapiens 5 SLC26A2 24 110 108 CCDS HistoryNCBI Gene:1836Re-query CCDS DB by CCDS ID:4300.1Re-query CCDS DB by GeneID:1836See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286298.5 ENSP00000286298.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000286298.5Link to Ensembl Protein Viewer:ENSP00000286298.4Re-query CCDS DB by Nucleotide ID:ENST00000286298Re-query CCDS DB by Protein ID:ENSP00000286298
Original member Current member NCBI NM_000112.4 NP_000103.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000112.4Link to Protein Sequence:NP_000103.2Re-query CCDS DB by Nucleotide ID:NM_000112Re-query CCDS DB by Protein ID:NP_000103Link to BLAST:NP_000103.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000103.2 739 P50443 739 100% 0 0

Chromosomal Locations for CCDS 4300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149977653 149978351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149980293 149981813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGTCTTCAGAAAGTAAAGAGCAACATAACGTTTCACCCAGAGACTCAGCTGAAGGAAATGACAGTTATC
CATCTGGGATCCATCTGGAACTTCAAAGGGAATCAAGTACTGACTTCAAGCAATTTGAGACCAATGATCA
ATGCAGACCTTATCATAGGATCCTTATTGAGCGTCAAGAGAAATCAGATACAAACTTCAAGGAGTTTGTT
ATTAAAAAGCTGCAGAAGAATTGCCAGTGCAGTCCAGCCAAAGCCAAAAATATGATTTTAGGTTTCCTTC
CTGTTTTGCAGTGGCTCCCAAAATACGACCTAAAGAAAAACATTTTAGGGGATGTGATGTCAGGCTTGAT
TGTGGGCATATTATTGGTGCCCCAGTCCATTGCTTATTCCCTGCTGGCTGGCCAAGAACCTGTCTATGGT
CTGTACACATCTTTTTTTGCCAGCATCATTTATTTTCTCTTGGGTACCTCCCGTCACATCTCTGTGGGCA
TTTTTGGAGTACTGTGCCTTATGATTGGTGAGACAGTTGACCGAGAACTACAGAAAGCTGGCTATGACAA
TGCCCATAGTGCTCCTTCCTTAGGAATGGTTTCAAATGGGAGCACATTATTAAATCATACATCAGACAGG
ATATGTGACAAAAGTTGCTATGCAATTATGGTTGGCAGCACTGTAACCTTTATAGCTGGAGTTTATCAGG
TAGCGATGGGCTTCTTTCAAGTGGGTTTTGTTTCTGTCTACCTCTCAGATGCCTTGCTGAGTGGATTTGT
CACTGGTGCCTCCTTCACTATTCTTACATCTCAGGCCAAGTATCTTCTTGGGCTCAACCTTCCTCGGACT
AATGGTGTGGGCTCACTCATCACTACCTGGATACATGTCTTCAGAAACATCCATAAGACCAATCTCTGTG
ATCTTATCACCAGCCTTTTGTGCCTTTTGGTTCTTTTGCCAACCAAAGAACTCAATGAACACTTCAAATC
CAAGCTTAAGGCACCGATTCCTATTGAACTTGTTGTTGTTGTAGCAGCCACATTAGCCTCTCATTTTGGA
AAACTACATGAAAATTATAATTCTAGTATTGCTGGACATATTCCCACTGGGTTTATGCCACCCAAAGTAC
CAGAATGGAACCTAATTCCTAGTGTGGCTGTAGATGCAATAGCTATTTCCATCATTGGTTTTGCTATCAC
TGTATCACTTTCTGAGATGTTTGCCAAGAAACATGGTTACACAGTCAAAGCAAACCAGGAAATGTATGCC
ATTGGCTTTTGTAATATCATCCCTTCCTTCTTCCACTGTTTTACTACTAGTGCAGCTCTTGCAAAGACAT
TGGTTAAAGAATCAACAGGCTGCCATACTCAGCTTTCTGGTGTGGTAACAGCCCTGGTTCTTTTGTTGGT
CCTCCTAGTAATAGCTCCTTTGTTCTATTCCCTTCAAAAAAGTGTCCTTGGTGTGATCACAATTGTAAAT
CTACGGGGAGCCCTTCGTAAATTTAGGGATCTTCCCAAAATGTGGAGTATTAGTAGAATGGATACAGTTA
TCTGGTTTGTTACTATGCTGTCCTCTGCACTGCTAAGTACTGAAATAGGCCTACTTGTTGGGGTTTGTTT
TTCTATATTTTGTGTCATCCTCCGCACTCAGAAGCCAAAGAGTTCACTGCTTGGCTTGGTGGAAGAGTCT
GAGGTCTTTGAATCTGTGTCTGCTTACAAGAACCTTCAGATTAAGCCAGGCATCAAGATTTTCCGCTTTG
TAGCCCCTCTCTACTACATAAACAAAGAATGCTTTAAATCTGCTTTATACAAACAAACTGTCAACCCAAT
CTTAATAAAGGTGGCTTGGAAGAAGGCAGCAAAGAGAAAGATCAAAGAAAAAGTAGTGACTCTTGGTGGA
ATCCAGGATGAAATGTCAGTGCAACTTTCCCATGATCCCTTGGAGCTGCATACTATAGTGATTGACTGCA
GTGCAATTCAATTTTTAGATACAGCAGGGATCCACACACTGAAAGAAGTTCGCAGAGATTATGAAGCCAT
TGGAATCCAGGTTCTGCTGGCTCAGTGCAATCCCACTGTGAGGGATTCCCTAACCAACGGAGAATATTGC
AAAAAGGAAGAAGAAAACCTTCTCTTCTATAGTGTGTATGAAGCGATGGCTTTTGCAGAAGTATCTAAAA
ATCAGAAAGGAGTATGTGTTCCCAATGGTCTGAGTCTTAGTAGTGATTAA

Translation (739 aa):
MSSESKEQHNVSPRDSAEGNDSYPSGIHLELQRESSTDFKQFETNDQCRPYHRILIERQEKSDTNFKEFV
IKKLQKNCQCSPAKAKNMILGFLPVLQWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPVYG
LYTSFFASIIYFLLGTSRHISVGIFGVLCLMIGETVDRELQKAGYDNAHSAPSLGMVSNGSTLLNHTSDR
ICDKSCYAIMVGSTVTFIAGVYQVAMGFFQVGFVSVYLSDALLSGFVTGASFTILTSQAKYLLGLNLPRT
NGVGSLITTWIHVFRNIHKTNLCDLITSLLCLLVLLPTKELNEHFKSKLKAPIPIELVVVVAATLASHFG
KLHENYNSSIAGHIPTGFMPPKVPEWNLIPSVAVDAIAISIIGFAITVSLSEMFAKKHGYTVKANQEMYA
IGFCNIIPSFFHCFTTSAALAKTLVKESTGCHTQLSGVVTALVLLLVLLVIAPLFYSLQKSVLGVITIVN
LRGALRKFRDLPKMWSISRMDTVIWFVTMLSSALLSTEIGLLVGVCFSIFCVILRTQKPKSSLLGLVEES
EVFESVSAYKNLQIKPGIKIFRFVAPLYYINKECFKSALYKQTVNPILIKVAWKKAAKRKIKEKVVTLGG
IQDEMSVQLSHDPLELHTIVIDCSAIQFLDTAGIHTLKEVRRDYEAIGIQVLLAQCNPTVRDSLTNGEYC
KKEEENLLFYSVYEAMAFAEVSKNQKGVCVPNGLSLSSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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