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Report for CCDS4305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4305.1 Public Homo sapiens 5 SLC6A7 24 110 108 CCDS HistoryNCBI Gene:6534Re-query CCDS DB by CCDS ID:4305.1Re-query CCDS DB by GeneID:6534See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 4305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230671.7 ENSP00000230671.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230671.7Link to Ensembl Protein Viewer:ENSP00000230671.2Re-query CCDS DB by Nucleotide ID:ENST00000230671Re-query CCDS DB by Protein ID:ENSP00000230671
Original member Current member NCBI NM_014228.5 NP_055043.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014228.5Link to Protein Sequence:NP_055043.2Re-query CCDS DB by Nucleotide ID:NM_014228Re-query CCDS DB by Protein ID:NP_055043Link to BLAST:NP_055043.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055043.2 636 Q99884 636 100% 0 0

Chromosomal Locations for CCDS 4305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150190328 150190360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150194728 150194911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150196716 150196847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150197042 150197276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150199228 150199366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150201089 150201223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150202347 150202450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150202579 150202703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150203667 150203779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150203907 150204038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150204532 150204631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150204827 150204927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150205456 150205623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150209406 150209615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGAAGAAGCTCCAGGGAGCTCACCTCCGCAAGCCTGTCACCCCAGACCTGCTGATGACCCCCAGTGACC
AGGGCGATGTCGACCTGGATGTGGACTTTGCTGCACACCGGGGGAACTGGACAGGCAAGCTGGACTTCCT
GCTGTCCTGCATTGGCTACTGTGTAGGCCTGGGGAATGTCTGGCGCTTCCCCTATCGAGCGTACACCAAT
GGAGGAGGCGCCTTCCTCGTGCCCTACTTCCTCATGCTGGCCATCTGTGGCATCCCCCTCTTCTTCCTGG
AGCTCTCCCTGGGCCAGTTCTCCAGCCTAGGGCCCCTGGCTGTCTGGAAAATCAGCCCTCTCTTCAAAGG
CGCCGGCGCAGCCATGCTGCTCATCGTGGGCTTGGTGGCCATCTACTACAACATGATCATCGCCTACGTG
CTCTTCTACCTCTTCGCCTCCCTCACCAGCGACCTACCCTGGGAGCACTGTGGCAACTGGTGGAACACAG
AACTCTGCCTGGAGCACAGAGTCTCCAAGGACGGCAACGGGGCCCTGCCCCTCAACCTCACCTGCACCGT
CAGCCCCAGCGAGGAGTACTGGAGCCGCTACGTCCTCCACATCCAAGGCAGCCAGGGCATCGGCAGCCCT
GGGGAGATCCGCTGGAACCTCTGCCTCTGCCTGCTGCTGGCCTGGGTCATCGTGTTCCTCTGTATCCTCA
AGGGTGTGAAGTCTTCGGGCAAGGTGGTGTATTTCACGGCCACGTTCCCCTACCTCATCCTGCTCATGCT
GCTGGTCCGCGGAGTCACCCTCCCAGGGGCCTGGAAGGGCATCCAGTTCTATCTCACCCCCCAGTTCCAC
CACTTGTTGTCTTCCAAGGTGTGGATTGAAGCTGCTCTTCAGATCTTCTATTCCCTGGGTGTGGGCTTCG
GGGGGCTCCTCACCTTTGCCTCCTACAACACGTTTCACCAGAACATCTATAGAGACACTTTCATCGTCAC
TCTGGGCAACGCCATCACCAGCATCCTGGCTGGCTTTGCCATCTTCTCCGTGCTGGGCTACATGTCTCAG
GAGCTGGGCGTGCCTGTGGACCAAGTAGCCAAAGCAGGCCCTGGCCTGGCCTTTGTCGTCTACCCACAGG
CCATGACCATGCTGCCTCTGTCACCCTTCTGGTCCTTTCTCTTCTTCTTCATGCTTCTGACTCTCGGCCT
AGATAGCCAGTTTGCTTTTCTGGAGACCATTGTGACAGCTGTGACAGATGAGTTCCCATACTACCTGCGG
CCCAAGAAGGCGGTGTTCTCAGGGCTCATCTGCGTGGCCATGTACCTGATGGGGCTGATCCTCACCACTG
ATGGGGGCATGTACTGGCTGGTCCTTCTGGATGACTACAGCGCCAGCTTCGGGCTGATGGTGGTGGTTAT
CACCACGTGCCTTGCCGTGACACGGGTGTATGGCATTCAGAGGTTCTGCCGAGACATCCACATGATGCTG
GGCTTCAAGCCGGGCCTCTACTTCAGGGCCTGCTGGCTGTTCCTGTCCCCAGCCACGCTCTTGGCCCTCA
TGGTGTATAGCATCGTCAAGTACCAGCCCTCGGAGTATGGCAGTTACCGCTTCCCGCCCTGGGCTGAGCT
GCTGGGCATCCTGATGGGCCTGCTGTCCTGCCTCATGATCCCAGCTGGCATGCTGGTGGCTGTGCTTCGA
GAAGAGGGCTCACTCTGGGAGCGGCTCCAACAGGCCAGCCGGCCGGCCATGGACTGGGGACCATCGCTGG
AGGAGAACCGGACGGGCATGTATGTGGCCACGCTGGCTGGGAGCCAGTCACCAAAGCCACTGATGGTGCA
CATGCGCAAGTACGGGGGCATCACCAGCTTCGAGAACACGGCCATCGAGGTGGACCGTGAGATTGCAGAG
GAGGAGGAGTCGATGATGTGA

Translation (636 aa):
MKKLQGAHLRKPVTPDLLMTPSDQGDVDLDVDFAAHRGNWTGKLDFLLSCIGYCVGLGNVWRFPYRAYTN
GGGAFLVPYFLMLAICGIPLFFLELSLGQFSSLGPLAVWKISPLFKGAGAAMLLIVGLVAIYYNMIIAYV
LFYLFASLTSDLPWEHCGNWWNTELCLEHRVSKDGNGALPLNLTCTVSPSEEYWSRYVLHIQGSQGIGSP
GEIRWNLCLCLLLAWVIVFLCILKGVKSSGKVVYFTATFPYLILLMLLVRGVTLPGAWKGIQFYLTPQFH
HLLSSKVWIEAALQIFYSLGVGFGGLLTFASYNTFHQNIYRDTFIVTLGNAITSILAGFAIFSVLGYMSQ
ELGVPVDQVAKAGPGLAFVVYPQAMTMLPLSPFWSFLFFFMLLTLGLDSQFAFLETIVTAVTDEFPYYLR
PKKAVFSGLICVAMYLMGLILTTDGGMYWLVLLDDYSASFGLMVVVITTCLAVTRVYGIQRFCRDIHMML
GFKPGLYFRACWLFLSPATLLALMVYSIVKYQPSEYGSYRFPPWAELLGILMGLLSCLMIPAGMLVAVLR
EEGSLWERLQQASRPAMDWGPSLEENRTGMYVATLAGSQSPKPLMVHMRKYGGITSFENTAIEVDREIAE
EEESMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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